Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00504 ATATTTTTGGCAGATGCAGTCAACATAGCAACCTACCTGATCAACAGACGACCCTCTATACCTCTAGATTTCAAACTTCCAGAAGAAGTTAGGAGCGGTAAAAAGGTAAACTTTTCTTTTCTGAAAGTGTTTGGTTGTTTATCATATGTTCATGTTGATGATTCTGATAGAAGCAAGCTTAATCCAAAATCTAAGAAGTTTTTTTTTATTGGTTATGGTGACGCCGAGTTTGGTTATCGTTTCTGGAATAATCAAAATCGGAAGATCATTCGCAGCAAAAACGTCTTCTTCAACGAACAGATATTTTATAAAGATGTTGTTGGTAAGACTTCTGATAGTGAGGATTCTGCATTGAAAGAGTCTACTATGGTTAACTTGAAAGATTTTTCAACTAATAATACTCCGACAGTCGAAGAAAATCGAGGTATTGTTGAAGAAGAAGTTGATGAGAATGTGGCTCCAGAGGTAAATCTGCAAACGCCGATTACAGAACTAAGAAGACCATCAAGAATCAGCAAACCAGTCCAAAAATGGTCTCCATCTCTTAGTTACATCTTACTGACCGACAGAGGAGAACCAGAATGTTATCAGGAAGCAGTACAGTCTAATGATTCGATTAAGTGGGAGGCAGCCAGGAAAGATGAGATGGATTCATTGAAGTCAAATCAAACTTGGCAATTGGCTGAGTTGCCGAAGGGTAAGAAAGCACTGCACAACAAAGTGTTCGACGGCCATGGCGGGGCTGATGCGGCAAATTTCATTGCAAAAAATGTGAAGAGGTTTTTTTTTGAAGATGTCGATTTTCCGAATTCTCGGGAAGTAGACGAGGGTTTTGTGTTAGAGGTCGGAAACTCTCTTCGTAGGTCGTTTTTGTTGGCCGATCAAGCTTTGGCAGAGCAAAGCAGTGTCAGTAGTTCTTCCGGGACTACAGCTCTTACTGCTCTTGTCCTCGGAAGCCTTCTTATGGTGGCAAATGTCGGGGATTGCCGAGCTGTTCTATGCCGAGGGGGAGAGGCGATAGACATGTCAACCGATCACAGGCCAACTCATCCCTCCGAAAGGAAACGCGTAGAGGAAGCAGGCGGCTTCGTCGACGATAACTACCTCAATGGCATTTTATCCGTGACAAGAGCATTAGGCGACTGGGACCTGAAATTCCCACGCGGGTCCCGTTCGCCACTAATTTCCGAACCAGAGATCAAGCACTCAGTCTTAACCGAGAAGGACGAGTTTTTGATTATGGCCTGTGACGGAATCTGGGACGTTATGTCCAGTCAACAGGCCGTCACTTTAGTCCGGCATGGGCTCCGCCGACACGGCAAGGTGGATAAGTGCGCAAGGGACCTAGTTAGGGAGGCTTTGAGGAGGAATGCATTTGATAATCTCACAGTAATTGTCGTGTGCTTCTCGAAGATCGATCTAGACGATCTTTCCCCTCCTCCGAAGCGGAAAATGGGATGTTGGAGCCTGTCTATTTTGTAA 1482 44.4 IFLADAVNIATYLINRRPSIPLDFKLPEEVRSGKKVNFSFLKVFGCLSYVHVDDSDRSKLNPKSKKFFFIGYGDAEFGYRFWNNQNRKIIRSKNVFFNEQIFYKDVVGKTSDSEDSALKESTMVNLKDFSTNNTPTVEENRGIVEEEVDENVAPEVNLQTPITELRRPSRISKPVQKWSPSLSYILLTDRGEPECYQEAVQSNDSIKWEAARKDEMDSLKSNQTWQLAELPKGKKALHNKVFDGHGGADAANFIAKNVKRFFFEDVDFPNSREVDEGFVLEVGNSLRRSFLLADQALAEQSSVSSSSGTTALTALVLGSLLMVANVGDCRAVLCRGGEAIDMSTDHRPTHPSERKRVEEAGGFVDDNYLNGILSVTRALGDWDLKFPRGSRSPLISEPEIKHSVLTEKDEFLIMACDGIWDVMSSQQAVTLVRHGLRRHGKVDKCARDLVREALRRNAFDNLTVIVVCFSKIDLDDLSPPPKRKMGCWSLSIL 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24923462 24933357 + Bpe012412.1 Bpe03g00504 101009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00504 493 ProSiteProfiles PPM-type phosphatase domain profile. 224 469 IPR001932 -
Bpe03g00504 493 CDD PP2Cc 241 469 IPR001932 -
Bpe03g00504 493 PANTHER PROTEIN PHOSPHATASE 2C 234 482 IPR015655 GO:0004722|GO:0006470
Bpe03g00504 493 SUPERFAMILY PP2C-like 240 470 IPR036457 -
Bpe03g00504 493 SMART PP2C_4 179 467 IPR001932 -
Bpe03g00504 493 Pfam Protein phosphatase 2C 239 461 IPR001932 -
Bpe03g00504 493 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 234 482 - -
Bpe03g00504 493 SMART PP2C_SIG_2 222 469 IPR001932 -
Bpe03g00504 493 Gene3D - 197 474 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00504 Bpe11g00126 CCT
Bpe03g00504 Bpe11g00126 ECH
Bpe03g00504 Bpe06g00598 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00504 Bpe-Chr3:24923462 Bpe14g01083 Bpe-Chr14:8110634 3.89E-94 dispersed
Bpe01g00698 Bpe-Chr1:5194643 Bpe03g00504 Bpe-Chr3:24923462 2.77E-09 transposed
Bpe11g00126 Bpe-Chr11:899549 Bpe03g00504 Bpe-Chr3:24923462 2.82E-140 wgd
Bpe03g00504 Bpe-Chr3:24923462 Bpe06g00598 Bpe-Chr6:16834966 1.78E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00504 K14803 - dcr:108220397 354.755