Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00509 ATGAATTCGGTAGACTTAAGAGCCGTGGGAAAGAGGAGTTTAGAATGGGATTTGAATGACTGGAAATGGGATGGGGATCTTTTCCTTGCAAGTTCTTTGAATTCAGTGCCATCCGGTACCTTTAGTCGACAAATCTTTTCGAATGGAACAACTCCCGTGACTGGAGGTTTGTCAAACAGTTCCTCATCGTGCTCAGATGATGTTACTATGGGGATTGAAAAAAGGAAGAACGAAATTGAAAAAAGGAGGAGAATTACTGCGATGGAAGATAGAGCCTTGAATGACGAATCGGGTGGGCCTATTCTAAAGCTTGGTTCACACAGTTATCGGATTCCTGGGAGGGAAGTAGGGAGTTGGGAGGGTAGTAGTGGCAAGAAGACTAAGTTTGTTGGAGGAAATTCAAACGGTGCAATTTGCCAGGTAGAGGACTGTGGAGCTGATCTGAGCAGGGCCAAGGATTATCACAGACGACATAAAGTCTGTGAGATGCATTCCAAAGCCAGCAGAGCGCTGGTAGGGAACCTCATGCAGCGATTTTGCCAGCAATGTAGCAGGTTTCATGCTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCCGGCCATAACAAGCGAAGAAGAAAAACAAACCCCGAGTCAGCTGCAAATGGAAGCTCCTCAAATGAAGATCAAACAAGTGGCTATCTCCTTATGAGCTTGTTGAGAATACTTTCCAACATGCATTCGAATCAGTCAGACCACTCCGCCAATCAGGATCTGATATCGCATCTTTTAAGGAGCATTGCCGGTCAAAATAGTGAACACAAGGAGAGAGACATACCTGTACATTTGCAAGAACCTCAAAATCTGCAAAACGGGAGATTGGTTGGCAACTCAGAGCTAGTCTCTTCTTCTCTTTCCAATGGTGCTCAGGGCCCTTCAATGCCATCTGAACAGCATACCCCACTGCCGTTGTCTGAGATGCCATTACAAGATGTTTCTCCTCATGATTCCAGAAGTGGAGATACAAAAACAATTTCTTCAGTTAAACATGGAACTATGAACAGTTCACTAGCTTATTCAGAACTCGTAGACTATGCTGCAGTGAAAAGCAAGATGAATAACTTTGATTTGAATGACATATATATTGATTCTGATGATGGAATAGAGGATGTGGAGACATCTGTACTTCCTGTACATTTGGGGACAAGTTCCCTAGAGTCTCCTTGGGCCCGACAAGATTCTCATCAGTCAAGTCCACCTCGAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGTATTGTTATTAAACTATTTGGAAAAGATCCCAGTGATTTCCCTCTTGACCTACGCACACAGGTTCTTGACTGGTTGGCACATAGTCCTACAGACATGGAGAGCTACATTAAGCCTGGTTGTGTGGTTCTTACCATCTATCTACGTCAGACAGAGGATGCTTGGGAGGAACTTTGCTATGACATATGTTGTAGCTTGAACAGGCTCCTCCAAGGCTCAGATGATACTTTCTGGAGAACGGGATGGGTTTATGCCAGAATTCAGCATCATTTAGCATTTGCTTTTCATGGTCAAGTTATGGTGGATACGTCGTTATCTCTCAGAAGCTCCCATTATTGTAATATTGTCAGTGTAAAACCTATTGCCGTATCTGCTTCAGAAAGGATTAAGTTTTCAGTTAGAGGCTCGAACTTGAAGCAGCCTGGAACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGCAACTCAAGAATCAACTGACACTGATTCAGTGAAGGAGCGTGATGATCATAATGAGCTGGAGTTCATCAGCTTTTCTTGTTCTATTCCGGTAGTAAATGGAAGGGGATTCATTGAGGTTGAAGATTATGGATTCAGCAGCAGCTTCTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGATATTTGTGTTCTTGAGGCTTCTCTGGAGTTCACTGATACGAGCTCAGACGCAACGGGAGTAACTGTGGCAGAAGCAAGGAGGCAAGCCATGGATTTTATTCATGAAATGGGGTGGCTTCTTCATAGGAAACAATTGAACTCTAGATTGAAAATTATGCATCCAAATGCAGATACTTACCCTTTGGATCGGTTCAAGTGGCTTATGGATTTCTCGATGAACCGTGATTGGTGTGCTGTAGTGAGGAAATTATTAAATATTCTGTTTGATGGAATTGTGGATATTGGAGATCACCCCTCTCTGAGTGACGCCTTATTCGAGATGAGTCTTCTACACCGGGCTGTACGGAGAAGCAGTAGGTCGCTTGTGGAGCTCCTTTTGAGATTCAAGCCCCAAAAAGTGACAACAGAAAACGAAGTGGTTGATGGATTTTTGTTTAGGCCTGATGCTGCAGGACCTGCCGGCTTGACCCCACTCCACATCGCAGCTGCTAAAGATGGGTCTGAAGACGTCCTTGATGCATTAACCGACGACCCTGGAATGGTTGGAATTGAAGCATGGAGGAATGCTCGTGACAGCACGGGGTCCACACCTGAAGCCTATGCTCGCTTACGTGGCCATTTTTTGTACATCCACCTCATCCAGAGGAAAATCAACAAGAGAGCTTCCTCTGGGCACGTTGTTCTCGATATTCCTATTGTTGTTCACTCGAATCATAGCACAAATGGTAAGCAAACGGACAACTTGGGCAGCGCCTTTGAGATTAGACTGACCCAGCCGAGAGCAAACTGCATAATCTGTGATAAGAAACTCAGCTATGGAAAATTGAGGCCATCACTGGTTTACAAGCCTGCAATGTTGTCAATGGTGGCTATTGCAGCCGTCTGTGTGTGTGTGGCACTTCTGTTCAAAAGCTCGCCGGAAGTCCTTTATGTATTCCGTCCATTCAGGTGGGAGTTGTTAGATTATGGAACGTGTTGA 2967 44.59 MNSVDLRAVGKRSLEWDLNDWKWDGDLFLASSLNSVPSGTFSRQIFSNGTTPVTGGLSNSSSSCSDDVTMGIEKRKNEIEKRRRITAMEDRALNDESGGPILKLGSHSYRIPGREVGSWEGSSGKKTKFVGGNSNGAICQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNPESAANGSSSNEDQTSGYLLMSLLRILSNMHSNQSDHSANQDLISHLLRSIAGQNSEHKERDIPVHLQEPQNLQNGRLVGNSELVSSSLSNGAQGPSMPSEQHTPLPLSEMPLQDVSPHDSRSGDTKTISSVKHGTMNSSLAYSELVDYAAVKSKMNNFDLNDIYIDSDDGIEDVETSVLPVHLGTSSLESPWARQDSHQSSPPRTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKDPSDFPLDLRTQVLDWLAHSPTDMESYIKPGCVVLTIYLRQTEDAWEELCYDICCSLNRLLQGSDDTFWRTGWVYARIQHHLAFAFHGQVMVDTSLSLRSSHYCNIVSVKPIAVSASERIKFSVRGSNLKQPGTRLLCALEGKYLTEKATQESTDTDSVKERDDHNELEFISFSCSIPVVNGRGFIEVEDYGFSSSFFPFIVAEDDVCSDICVLEASLEFTDTSSDATGVTVAEARRQAMDFIHEMGWLLHRKQLNSRLKIMHPNADTYPLDRFKWLMDFSMNRDWCAVVRKLLNILFDGIVDIGDHPSLSDALFEMSLLHRAVRRSSRSLVELLLRFKPQKVTTENEVVDGFLFRPDAAGPAGLTPLHIAAAKDGSEDVLDALTDDPGMVGIEAWRNARDSTGSTPEAYARLRGHFLYIHLIQRKINKRASSGHVVLDIPIVVHSNHSTNGKQTDNLGSAFEIRLTQPRANCIICDKKLSYGKLRPSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTC 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24977584 24982686 - Bpe012417.1 Bpe03g00509 101014

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00509 988 MobiDBLite consensus disorder prediction 48 69 - -
Bpe03g00509 988 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bpe03g00509 988 SUPERFAMILY SBT domain 138 218 IPR036893 GO:0003677|GO:0005634
Bpe03g00509 988 MobiDBLite consensus disorder prediction 300 318 - -
Bpe03g00509 988 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 987 IPR044817 GO:0003677
Bpe03g00509 988 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 7 987 - -
Bpe03g00509 988 MobiDBLite consensus disorder prediction 202 228 - -
Bpe03g00509 988 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bpe03g00509 988 MobiDBLite consensus disorder prediction 300 346 - -
Bpe03g00509 988 SUPERFAMILY Ankyrin repeat 767 874 IPR036770 -
Bpe03g00509 988 MobiDBLite consensus disorder prediction 403 441 - -
Bpe03g00509 988 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bpe03g00509 988 Gene3D - 745 889 IPR036770 -
Bpe03g00509 988 MobiDBLite consensus disorder prediction 48 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00509 - - - mcha:111025506 1238.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00509 Bpe11g00121 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00509 Bpe-Chr3:24977584 Bpe12g00474 Bpe-Chr12:10506324 1.40E-34 dispersed
Bpe14g01158 Bpe-Chr14:8630194 Bpe03g00509 Bpe-Chr3:24977584 6.55E-21 dispersed
Bpe11g00121 Bpe-Chr11:867113 Bpe03g00509 Bpe-Chr3:24977584 0 wgd
Bpe13g00713 Bpe-Chr13:13682608 Bpe03g00509 Bpe-Chr3:24977584 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50670 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50670 63.6 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21096 PF03110 SBP 3.60E-29 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00509 Bpe_Chr03 FPKM 6.461347 4.939141 3.666217 3.432843 7.561164 6.211928 6.831644 2.655256 3.806189 4.111196