Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bpe03g00509	ATGAATTCGGTAGACTTAAGAGCCGTGGGAAAGAGGAGTTTAGAATGGGATTTGAATGACTGGAAATGGGATGGGGATCTTTTCCTTGCAAGTTCTTTGAATTCAGTGCCATCCGGTACCTTTAGTCGACAAATCTTTTCGAATGGAACAACTCCCGTGACTGGAGGTTTGTCAAACAGTTCCTCATCGTGCTCAGATGATGTTACTATGGGGATTGAAAAAAGGAAGAACGAAATTGAAAAAAGGAGGAGAATTACTGCGATGGAAGATAGAGCCTTGAATGACGAATCGGGTGGGCCTATTCTAAAGCTTGGTTCACACAGTTATCGGATTCCTGGGAGGGAAGTAGGGAGTTGGGAGGGTAGTAGTGGCAAGAAGACTAAGTTTGTTGGAGGAAATTCAAACGGTGCAATTTGCCAGGTAGAGGACTGTGGAGCTGATCTGAGCAGGGCCAAGGATTATCACAGACGACATAAAGTCTGTGAGATGCATTCCAAAGCCAGCAGAGCGCTGGTAGGGAACCTCATGCAGCGATTTTGCCAGCAATGTAGCAGGTTTCATGCTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGTAGGCGTTTGGCCGGCCATAACAAGCGAAGAAGAAAAACAAACCCCGAGTCAGCTGCAAATGGAAGCTCCTCAAATGAAGATCAAACAAGTGGCTATCTCCTTATGAGCTTGTTGAGAATACTTTCCAACATGCATTCGAATCAGTCAGACCACTCCGCCAATCAGGATCTGATATCGCATCTTTTAAGGAGCATTGCCGGTCAAAATAGTGAACACAAGGAGAGAGACATACCTGTACATTTGCAAGAACCTCAAAATCTGCAAAACGGGAGATTGGTTGGCAACTCAGAGCTAGTCTCTTCTTCTCTTTCCAATGGTGCTCAGGGCCCTTCAATGCCATCTGAACAGCATACCCCACTGCCGTTGTCTGAGATGCCATTACAAGATGTTTCTCCTCATGATTCCAGAAGTGGAGATACAAAAACAATTTCTTCAGTTAAACATGGAACTATGAACAGTTCACTAGCTTATTCAGAACTCGTAGACTATGCTGCAGTGAAAAGCAAGATGAATAACTTTGATTTGAATGACATATATATTGATTCTGATGATGGAATAGAGGATGTGGAGACATCTGTACTTCCTGTACATTTGGGGACAAGTTCCCTAGAGTCTCCTTGGGCCCGACAAGATTCTCATCAGTCAAGTCCACCTCGAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGAGCCGCACAGATCGTATTGTTATTAAACTATTTGGAAAAGATCCCAGTGATTTCCCTCTTGACCTACGCACACAGGTTCTTGACTGGTTGGCACATAGTCCTACAGACATGGAGAGCTACATTAAGCCTGGTTGTGTGGTTCTTACCATCTATCTACGTCAGACAGAGGATGCTTGGGAGGAACTTTGCTATGACATATGTTGTAGCTTGAACAGGCTCCTCCAAGGCTCAGATGATACTTTCTGGAGAACGGGATGGGTTTATGCCAGAATTCAGCATCATTTAGCATTTGCTTTTCATGGTCAAGTTATGGTGGATACGTCGTTATCTCTCAGAAGCTCCCATTATTGTAATATTGTCAGTGTAAAACCTATTGCCGTATCTGCTTCAGAAAGGATTAAGTTTTCAGTTAGAGGCTCGAACTTGAAGCAGCCTGGAACAAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACTGAGAAGGCAACTCAAGAATCAACTGACACTGATTCAGTGAAGGAGCGTGATGATCATAATGAGCTGGAGTTCATCAGCTTTTCTTGTTCTATTCCGGTAGTAAATGGAAGGGGATTCATTGAGGTTGAAGATTATGGATTCAGCAGCAGCTTCTTTCCATTTATAGTTGCGGAGGATGATGTATGTTCAGATATTTGTGTTCTTGAGGCTTCTCTGGAGTTCACTGATACGAGCTCAGACGCAACGGGAGTAACTGTGGCAGAAGCAAGGAGGCAAGCCATGGATTTTATTCATGAAATGGGGTGGCTTCTTCATAGGAAACAATTGAACTCTAGATTGAAAATTATGCATCCAAATGCAGATACTTACCCTTTGGATCGGTTCAAGTGGCTTATGGATTTCTCGATGAACCGTGATTGGTGTGCTGTAGTGAGGAAATTATTAAATATTCTGTTTGATGGAATTGTGGATATTGGAGATCACCCCTCTCTGAGTGACGCCTTATTCGAGATGAGTCTTCTACACCGGGCTGTACGGAGAAGCAGTAGGTCGCTTGTGGAGCTCCTTTTGAGATTCAAGCCCCAAAAAGTGACAACAGAAAACGAAGTGGTTGATGGATTTTTGTTTAGGCCTGATGCTGCAGGACCTGCCGGCTTGACCCCACTCCACATCGCAGCTGCTAAAGATGGGTCTGAAGACGTCCTTGATGCATTAACCGACGACCCTGGAATGGTTGGAATTGAAGCATGGAGGAATGCTCGTGACAGCACGGGGTCCACACCTGAAGCCTATGCTCGCTTACGTGGCCATTTTTTGTACATCCACCTCATCCAGAGGAAAATCAACAAGAGAGCTTCCTCTGGGCACGTTGTTCTCGATATTCCTATTGTTGTTCACTCGAATCATAGCACAAATGGTAAGCAAACGGACAACTTGGGCAGCGCCTTTGAGATTAGACTGACCCAGCCGAGAGCAAACTGCATAATCTGTGATAAGAAACTCAGCTATGGAAAATTGAGGCCATCACTGGTTTACAAGCCTGCAATGTTGTCAATGGTGGCTATTGCAGCCGTCTGTGTGTGTGTGGCACTTCTGTTCAAAAGCTCGCCGGAAGTCCTTTATGTATTCCGTCCATTCAGGTGGGAGTTGTTAGATTATGGAACGTGTTGA	2967	44.59	MNSVDLRAVGKRSLEWDLNDWKWDGDLFLASSLNSVPSGTFSRQIFSNGTTPVTGGLSNSSSSCSDDVTMGIEKRKNEIEKRRRITAMEDRALNDESGGPILKLGSHSYRIPGREVGSWEGSSGKKTKFVGGNSNGAICQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTNPESAANGSSSNEDQTSGYLLMSLLRILSNMHSNQSDHSANQDLISHLLRSIAGQNSEHKERDIPVHLQEPQNLQNGRLVGNSELVSSSLSNGAQGPSMPSEQHTPLPLSEMPLQDVSPHDSRSGDTKTISSVKHGTMNSSLAYSELVDYAAVKSKMNNFDLNDIYIDSDDGIEDVETSVLPVHLGTSSLESPWARQDSHQSSPPRTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKDPSDFPLDLRTQVLDWLAHSPTDMESYIKPGCVVLTIYLRQTEDAWEELCYDICCSLNRLLQGSDDTFWRTGWVYARIQHHLAFAFHGQVMVDTSLSLRSSHYCNIVSVKPIAVSASERIKFSVRGSNLKQPGTRLLCALEGKYLTEKATQESTDTDSVKERDDHNELEFISFSCSIPVVNGRGFIEVEDYGFSSSFFPFIVAEDDVCSDICVLEASLEFTDTSSDATGVTVAEARRQAMDFIHEMGWLLHRKQLNSRLKIMHPNADTYPLDRFKWLMDFSMNRDWCAVVRKLLNILFDGIVDIGDHPSLSDALFEMSLLHRAVRRSSRSLVELLLRFKPQKVTTENEVVDGFLFRPDAAGPAGLTPLHIAAAKDGSEDVLDALTDDPGMVGIEAWRNARDSTGSTPEAYARLRGHFLYIHLIQRKINKRASSGHVVLDIPIVVHSNHSTNGKQTDNLGSAFEIRLTQPRANCIICDKKLSYGKLRPSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTC	988

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
3	24977584	24982686	-	Bpe012417.1	Bpe03g00509	101014

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bpe03g00509	988	MobiDBLite	consensus disorder prediction	48	69	-	-
	Bpe03g00509	988	Gene3D	-	130	200	IPR036893	GO:0003677\|GO:0005634
	Bpe03g00509	988	SUPERFAMILY	SBT domain	138	218	IPR036893	GO:0003677\|GO:0005634
	Bpe03g00509	988	MobiDBLite	consensus disorder prediction	300	318	-	-
	Bpe03g00509	988	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	7	987	IPR044817	GO:0003677
	Bpe03g00509	988	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED	7	987	-	-
	Bpe03g00509	988	MobiDBLite	consensus disorder prediction	202	228	-	-
	Bpe03g00509	988	ProSiteProfiles	Zinc finger SBP-type profile.	136	213	IPR004333	GO:0003677
	Bpe03g00509	988	MobiDBLite	consensus disorder prediction	300	346	-	-
	Bpe03g00509	988	SUPERFAMILY	Ankyrin repeat	767	874	IPR036770	-
	Bpe03g00509	988	MobiDBLite	consensus disorder prediction	403	441	-	-
	Bpe03g00509	988	Pfam	SBP domain	139	212	IPR004333	GO:0003677
	Bpe03g00509	988	Gene3D	-	745	889	IPR036770	-
	Bpe03g00509	988	MobiDBLite	consensus disorder prediction	48	68	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Bpe03g00509	Bpe11g00121	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bpe03g00509	Bpe-Chr3:24977584	Bpe12g00474	Bpe-Chr12:10506324	1.40E-34	dispersed
	Bpe14g01158	Bpe-Chr14:8630194	Bpe03g00509	Bpe-Chr3:24977584	6.55E-21	dispersed
	Bpe11g00121	Bpe-Chr11:867113	Bpe03g00509	Bpe-Chr3:24977584	0	wgd
	Bpe13g00713	Bpe-Chr13:13682608	Bpe03g00509	Bpe-Chr3:24977584	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	21096	PF03110	SBP	3.60E-29	No_clan	Bpe	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bpe03g00509	-		-	mcha:111025506	1238.79