Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00513 ATGGCAGCCGTCGCCACAGCAAGCGTTGTTCCAGCGAATAGGCGGCGTCCCCCCGCCGCTGCTGAAGATAAGGTGGAGTTCGAGACAACGGAGGGGGTCGAGCCGATTATGAGTTTTGCTCAGATGGGTATTAAGGACGATCTGCTTCGTGGGATATACGCTTATGGTTTTGAGAAACCCTCCGCCATCCAACAGAGAGCCGTCAGGCCAATCATTGAGGGTCGGGATGTAATAGCACAGGCTCAATCTGGTACTGGCAAGACCTCCATGATTGCTCTCACCGTTTGCCAAATCGTGGATACATCAAGTAGAGAGGTACAAGCCTTAATATTGTCTCCTACAAGGGAATTGGCCACTCAGACGGAAAAAGTCATATTGACCGTTGGCGATTTCATAAATATACAAGTGCATTCATGCATTGGTGGGAAAAGTGTGGGCGAAGATATCAGAAAGCTAGAATATGGTGTTCATGTGGTTTCTGGAACTCCTGGAAGAGTTTGTGATATGATCAAGAGGAGAACACTGCGTACTAGAAACATTAAATTACTCGTCCTTGATGAATCTGATGAGATGTTGAGCAGAGGGTTCAAGGACCAAATTTATGACGTGTACAGATATCTACCGCCAGAACTTCAGGTTGTTTTGATTTCTGCCACTCTTCCTCATGAAATTTTGGAGATTACGAACAAGTTTATGACAGATCCTGTGAGGATACTTGTTAAACGTGATGAGTTAACTTTGGAGGGTATTAAGCAGTTTTTCGTCGCAGTTGAAAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTATATGATACTCTAACCATTACGCAGGCTGTTATTTTTTGCAATACAAAGAGAAAGGTGGAATGGTTGACAGAAAAAATGCGCAGTAATAACTTCACTGTTTCTCAAATGCACGGTGACATGCCTCAAAAGGAAAGAGATGCTATTATGGGGGATTTCCGATCTGGTACAACTCGTGTTCTCATAACAACAGATGTTTGGGCTCGAGGGATTGATGTTTCGTTGGTTATCAACTATGACCTTCCAAATAATCGAGAACTTTATATTCACCGAATTGGTCGGTCTGGCCGTTTTGGACGAAAGGGTGTTGCAATAAACTTTGTGAAGAGTGATGACATCAAGATTCTGAGGGACATTGAGCAATATTACAGTACCCAGATTGATGAAATGCCAATGAATGTTGCTGATTTGATATAA 1224 43.14 MAAVATASVVPANRRRPPAAAEDKVEFETTEGVEPIMSFAQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQIVDTSSREVQALILSPTRELATQTEKVILTVGDFINIQVHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRNIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSQMHGDMPQKERDAIMGDFRSGTTRVLITTDVWARGIDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25085944 25089993 - Bpe012421.1 Bpe03g00513 101018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00513 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 21 400 - -
Bpe03g00513 407 CDD SF2_C_DEAD 250 377 - -
Bpe03g00513 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Bpe03g00513 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 407 IPR001650 -
Bpe03g00513 407 Pfam Helicase conserved C-terminal domain 263 368 IPR001650 -
Bpe03g00513 407 PANTHER BNAA01G25900D PROTEIN 21 400 - -
Bpe03g00513 407 SMART helicmild6 290 368 IPR001650 -
Bpe03g00513 407 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Bpe03g00513 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724
Bpe03g00513 407 SMART ultradead3 56 253 IPR014001 -
Bpe03g00513 407 Gene3D - 21 241 IPR027417 -
Bpe03g00513 407 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676|GO:0005524
Bpe03g00513 407 MobiDBLite consensus disorder prediction 1 21 - -
Bpe03g00513 407 Gene3D - 242 407 IPR027417 -
Bpe03g00513 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 390 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00513 Bpe-Chr3:25085944 Bpe14g00268 Bpe-Chr14:2747626 1.41E-179 dispersed
Bpe03g00513 Bpe-Chr3:25085944 Bpe02g01550 Bpe-Chr2:18538790 6.23E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00513 K13025 - csv:101222664 746.117