Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00541 ATGTGTGGTGGTTCTGAAACACTAAAATTAGCATCTACTGATACCTCGTCTGCTGCACAAATTACTACTGCTAAGACGAAAGACATGAGGTGCTTGATAACTGGAACTGAATTTTCTTTATACAACTTGTTGGAATTTGCTTCTGATAATAACGTTGAAGGATTTAAACGATTGATAGATTGTGATGTATCTTCCATTAATAAGTCTGGACTGTGGTATGTCCGTCATAGTGGCTCAAAGCAGGTTGTTCAAGAGGATAGAACCCCACTAATGGTTGCTGCTACCTATGGTAGTGTTAATGTCCTGAAACTTTTGCTTTCGATTCCTGAGATTGATGTTAATCTCTCATCTGGACTGGATAAAAGCACTGCCCTTCATTGTGCTGCTTCTGGTGGATCTGTCAGCATTTTTGAGACTGTTAATATTCTTTTAACTGCGGGTGCGGATCCAAATTTGGTTGATGCAAATGGTTATCGCCCTGTAGATGTTATTTATGTACATCCAAAGCTGCATAACATGAAGGTCAAACTTGAGGAACTATTAAGAAGTAGTGATTGTCATCCTGATGAATTGACCTCCTTGCAATTATCCTTCATTACCTCATGTTCTTTATCACCTGCTCTTTCTTCAGATCCAGAGAAGGACGTTTTCTCTTTGGAGTCAACATCTTCTCTTGTTATGAAAAGTACTGATGAGTCTGTTAATTCTACAGTGGAGAAGAAAGAATATCTAATTGATCCTTCTCTTCCTGACATCAAAAATAGTATTTATGCAACTGATGAGTTTCGCATGTTTTCCCTCAAGGTGAGACCTTGTTCACGAGCATATTCACATGATTGGACTGATTGTCCTTTTGTTCACCCTGGGGAGAATGCTCGCAGAAGGGATCCAAGAAAGTTTCACTACAGTTGTGTACCTTGCCCAGATTTTCGAAAGGGTGCTTGTAGGCGTGGAGACATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTTCATCCTGCTCAGTATCGAACACGCCTATGCAAGGATGGGGCAAGTTGTGATAGACGGGTTTGTTTTTTTGCCCATACAACTGAGGAGCTCAGGCCCTTGTATGTTTCTACTGGTTCTGCTGTTCCTTCGCCACGATTGTCAACATCAACACCTAATGTTATGGACATGGCTGCCACATTAAGTTTCTTTCCTGGATCTCCTTCATCATTATCAGTCATGTCTACTTCTCCATTTTCTCAGCCAATGTCTCCTCCATTTTCTCAGTCAATGTCTCCAGCCTCAGCAGCCTGGGCTCAGCCAAATGTACCCACTCTTGATCTCCCTGGAAGCAGCTTACAATCCAGTCGACTGAGAACTTCTCTTAATGCCAGAGACATGTCACTGGAAGATTTAAATAGGTTGATGAATCATGACTCACAGAAACAGGTTGTGAGTGACGAGAATTTTTTCTCGCAGCTTCGCCCTAGTTCTGTCTGTCTTAGTCGCTCTGGCAGACCTAAAACTCTAACTCCTTCCAATCTGGAAGAGCTTTTCTTTTCTGAGATATCTCCATCACCTCGATTTTCTGATCCTGGAGCAGCCTCTGTGTTTTCTCCAACTTACAAGTCAGCTGTTTTTTCACAATTCCAACAACAGCAGAGCATGTTGTCACACATTAATACTAGTATTCTGTCTCCGAAAACTGTTGAACTCCCATTGCAGCATGCCTCTTTGGGAGCCTTGTCTCCTGGACAGATGTCGCCAAGAAATGCTGATCTGATATCTCCTATAGGCTCTAGACTTTCTCCATTTGCTCATGGCGAGAAGCATCAAAATTTTCATTGCTTGAGCTCTAGGGACCTTGGTTCCAACATTCCTGTCTCAAATGGATGCCCAGTAAAGTCTTGGTCGAAATGGGGTTCTTCTATGGGAAAAGCGGATTGGTCAGTTCATGGGGATGAACTGGCTCGTTTGAGAGGATCATCGTTACTTGAGCTTGTTAATACTGTGGAGGAGCCTGACTTCTCATGGGTCCAAACCCTTGTCAAAGAATCTCCACCAGAAATTATGAGAGACAAGTTAACAGTTCCAGTCCTAGGAGGTGCAGTGCCCTGTGAGGCTTTTACTACTAATTCTCAATTTGAATCCATTGATCATTTGGTTTTAGGATCTTTGCTTGAGCAGATGCCAGCTTAA 2172 42.54 MCGGSETLKLASTDTSSAAQITTAKTKDMRCLITGTEFSLYNLLEFASDNNVEGFKRLIDCDVSSINKSGLWYVRHSGSKQVVQEDRTPLMVAATYGSVNVLKLLLSIPEIDVNLSSGLDKSTALHCAASGGSVSIFETVNILLTAGADPNLVDANGYRPVDVIYVHPKLHNMKVKLEELLRSSDCHPDELTSLQLSFITSCSLSPALSSDPEKDVFSLESTSSLVMKSTDESVNSTVEKKEYLIDPSLPDIKNSIYATDEFRMFSLKVRPCSRAYSHDWTDCPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGASCDRRVCFFAHTTEELRPLYVSTGSAVPSPRLSTSTPNVMDMAATLSFFPGSPSSLSVMSTSPFSQPMSPPFSQSMSPASAAWAQPNVPTLDLPGSSLQSSRLRTSLNARDMSLEDLNRLMNHDSQKQVVSDENFFSQLRPSSVCLSRSGRPKTLTPSNLEELFFSEISPSPRFSDPGAASVFSPTYKSAVFSQFQQQQSMLSHINTSILSPKTVELPLQHASLGALSPGQMSPRNADLISPIGSRLSPFAHGEKHQNFHCLSSRDLGSNIPVSNGCPVKSWSKWGSSMGKADWSVHGDELARLRGSSLLELVNTVEEPDFSWVQTLVKESPPEIMRDKLTVPVLGGAVPCEAFTTNSQFESIDHLVLGSLLEQMPA 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25640373 25642544 + Bpe012451.1 Bpe03g00541 101046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00541 723 ProSiteProfiles Zinc finger C3H1-type profile. 306 328 IPR000571 GO:0046872
Bpe03g00541 723 Gene3D - 40 182 IPR036770 -
Bpe03g00541 723 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Bpe03g00541 723 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Bpe03g00541 723 SUPERFAMILY Ankyrin repeat 43 167 IPR036770 -
Bpe03g00541 723 Pfam Ankyrin repeats (3 copies) 47 154 IPR002110 GO:0005515
Bpe03g00541 723 ProSiteProfiles Ankyrin repeat profile. 85 107 IPR002110 GO:0005515
Bpe03g00541 723 SMART ANK_2a 120 152 IPR002110 GO:0005515
Bpe03g00541 723 SMART ANK_2a 85 115 IPR002110 GO:0005515
Bpe03g00541 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
Bpe03g00541 723 ProSiteProfiles Ankyrin repeat profile. 120 155 IPR002110 GO:0005515
Bpe03g00541 723 Gene3D - 301 364 - -
Bpe03g00541 723 PANTHER UNKEMPT FAMILY MEMBER 24 721 IPR045234 -
Bpe03g00541 723 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 24 721 - -
Bpe03g00541 723 ProSiteProfiles Ankyrin repeat region circular profile. 85 107 - -
Bpe03g00541 723 ProSiteProfiles Ankyrin repeat region circular profile. 120 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00541 Bpe-Chr3:25640373 Bpe15g01239 Bpe-Chr15:20940315 2.85E-134 dispersed
Bpe03g01118 Bpe-Chr3:30267889 Bpe03g00541 Bpe-Chr3:25640373 0 transposed
Bpe04g01472 Bpe-Chr4:21301267 Bpe03g00541 Bpe-Chr3:25640373 0 transposed
Bpe10g00548 Bpe-Chr10:12538611 Bpe03g00541 Bpe-Chr3:25640373 0 wgd
Bpe11g00093 Bpe-Chr11:651152 Bpe03g00541 Bpe-Chr3:25640373 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21098 PF12796 Ank_2 5.30E-10 CL0465 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00541 - - zju:107417606 873.618