Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00575 ATGGCGGATCTCGAAGAACGATTGCTTCCTCCTAGAGCTGCATCCGCCATTACCCTTGGGGAGTCATCTCATCGACCATCTTCCTCTGGAAGGCCACCTTTTCAAGGGCTGGATCTATCTGGATTGAAGAAACGAGGTCAAGGAGCTCGGTCTTGGATTCAGGTTGACTTATCTGGGAACTCTCAATGTATTGAGGTTGATAAGTTTACCATGATGCGACGTTGCGATCTTCCTGCTCGTGATTTGCGGCTGCTAGATCCTTTATTAGTCTATCCAACTACAATACTTGGCAGGGAGAAGGCTATTGTCGTTAATCTGGAGCAAATTCGATGCATTATCACTGCAGACGAGGTTCTCTTGTTGAATTCACTTGATAGTTATGTTCTTCAATATGCAGAAGAACTTCAACGGCGACTAATAGCTAATGGGACTGGTGAGGTTTGGCAATCAGAAGGTCTTGACTTGAACTGGAGGAGGGGAGGTAGCAACTTTGATAATGCGCGTCGTAGCACATCACCTGATTACTTGCCGTTTGAGTTTAGGGCTCTAGAAGTTGCTCTTGAAACTGCTTGTACGTTTCTTGATTCCCAGGCAGCAGAATTAGAATCTGAAGCACACCCATTGTTAGATGAACTCATATCAAAGATCAGTACATTAAATTTGGAGCGTGTGAGGAGATTGAAAAGCAGACTTGTTGCCTTGACTCGTAGAGTTCAGAATGTTAGGGACAAAATAGAGCAAGTCATGGAGGATGATGGCAATATGGCTGAAATGTATCTCACGGAAAAGAAAAGGCGGATGGAGGCTTCATTTTACGGTGATCAGTCTTTGATGCCATACAAATCGACTGATGGAGCTTCAGCTTCTGCGCCTGCTTCGCCTGTATCCGCCCTTCCTGGAGCCAGAAAGCTGGAGAAGAGCTTGAGTATTGCTAGAAGTCAACATGAGACCGCAAGGAGTTCAGAAAGTGCTACTGATAGTATAGCAGAGCTTGAGATGTTGTTGGAAGCATATTTTGTTGTCATTGATAACACCTTTAATAAATTGACGTCATTGAAAGAGTTCATCGATTACACTGAAGATTTCATCAACATTCAGCTGGATAATGTAAGGAACCAGCTGATCCAGTTTGAGCTACTACTCACAACGGCAACCTTCGTGGTTGCCATCTTCGGGATGGTTGCAGGGATCTTTGGTATGAACTTCTCAATACCGCTTTTTGACAACGAAGGTGCATTTAAGTGGGTTCTTGTAATCACAGGAGTAACTGGTATATGCATTTTTTCTGCGTTTCTTTGGTTTTTCAAAAATAGAAGCCTCATGGCATTGTAG 1332 43.77 MADLEERLLPPRAASAITLGESSHRPSSSGRPPFQGLDLSGLKKRGQGARSWIQVDLSGNSQCIEVDKFTMMRRCDLPARDLRLLDPLLVYPTTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYAEELQRRLIANGTGEVWQSEGLDLNWRRGGSNFDNARRSTSPDYLPFEFRALEVALETACTFLDSQAAELESEAHPLLDELISKISTLNLERVRRLKSRLVALTRRVQNVRDKIEQVMEDDGNMAEMYLTEKKRRMEASFYGDQSLMPYKSTDGASASAPASPVSALPGARKLEKSLSIARSQHETARSSESATDSIAELEMLLEAYFVVIDNTFNKLTSLKEFIDYTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGMVAGIFGMNFSIPLFDNEGAFKWVLVITGVTGICIFSAFLWFFKNRSLMAL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26022567 26024945 - Bpe012484.1 Bpe03g00575 101080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00575 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 380 432 IPR045863 -
Bpe03g00575 443 MobiDBLite consensus disorder prediction 1 37 - -
Bpe03g00575 443 CDD Mrs2_Mfm1p-like 52 440 IPR039204 -
Bpe03g00575 443 Gene3D Magnesium transport protein CorA, transmembrane region 130 374 - -
Bpe03g00575 443 Gene3D - 37 123 - -
Bpe03g00575 443 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 443 - -
Bpe03g00575 443 MobiDBLite consensus disorder prediction 20 34 - -
Bpe03g00575 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 443 IPR039204 -
Bpe03g00575 443 Coils Coil 224 251 - -
Bpe03g00575 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00575 K16075 MRS2, MFM1; magnesium transporter - zju:107406606 677.552
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00575 Bpe-Chr3:26022567 Bpe13g01373 Bpe-Chr13:18972938 1.11E-143 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G16010 76.8 1.3e-182 636.0
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G16010 56.2 2.7e-114 409.1
Bpe05g00868 . 1 367 MRS2 Gene Family AT5G64560 78.4 3.0e-151 531.6
Bpe07g00288 . 1 433 MRS2 Gene Family AT3G19640 64.8 3.3e-134 475.3
Bpe07g00026 . 1 446 MRS2 Gene Family AT3G58970 64.7 2.2e-145 512.3
Bpe13g01373 . 11 391 MRS2 Gene Family AT2G03620 67.8 3.9e-131 464.9
Bpe07g00026 . 61 445 MRS2 Gene Family AT4G28580 50.3 8.5e-91 330.9
Bpe05g00868 . 1 329 MRS2 Gene Family AT5G09690 73.7 6.2e-121 430.6
Bpe05g00868 . 23 289 MRS2 Gene Family AT5G09720 66.4 1.2e-81 300.1
Bpe03g00575 . 1 443 MRS2 Gene Family AT1G80900 75.5 3.1e-179 624.8
Bpe13g01373 . 11 391 MRS2 Gene Family AT1G80900 56.1 2.9e-113 405.6
Bpe08g01293 . 121 460 MRS2 Gene Family AT5G22830 82.1 2.2e-156 548.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00575 Bpe_Chr03 FPKM 18.246672 20.627289 14.481639 13.096918 15.629966 17.476555 17.445683 15.817523 14.988878 17.583033