Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00674 ATGAGTAATTGGTTGGGATTTTCGCTCACTCCACACCTGAGAATCCATGAAAGCTTCAGCGGTAGAGAAGACGAGGAAGAGCAGAATCAGCATGGAAGTTTTCCTCCTTTTTCTGACTTGCCCTTGAGCTCTGATGGAACACTGTGCGTTTCTGCTGATCCATTCGGACGCATCAATGGCGTTCAAGATTGGAGATACATGAGTGCAGTAAATGGCGGTTCGAATCCAACTGAAGAAAGTCCAAAGCTTGAAGATTTCTTGGGAAGTTGCTACGTTGGCCCGCCTCCGGCTCCGGCTGAGACTAAAGTATTTTGCCGTCGACCGCAAGAAGAAGACGAAAGCAGATTTCTCTCTAAAATCAACTCCCAAAAAGAGATGGAAACAAGAGGAGAGAACATGGCAAACCCATCTCAATGCCTAATCCAATCTAATTACCCACAGCCTTTAATCTCGATTCTCGATTCTTCTTACAAGTCTTGGTTGGATCAAACTCCGTTGTTTTCTGATCAAACAACATGTTCAAGTGTGGGAACTGATTCTAGTTTTCAGTCGCTGTCTCTAAGTATGAGCCCAAGCTCACAGAATGTGACTGATAATCGAAAACGTCCAGCAGTGAGGACCTTAGTTAGAGAACCTATTCCAAGAAAATCAATTGATACCTTTGGACACAGAACTTCTCAGTATCGTGACATAGATGGACAGGAAGATTTGAAGCTCATCTATGGGACAACAGTTGCAGAAAAGAAGGGCAAACTAGGAAGGGAAGGCAGGGTGAGAACGTTGAAGCAGATTGCATTTTTACCCTTGCATTTTATCGTACAAAAAAAGAATAAATGGATTAAATCATATGTTTTAGAGTATAAACGTGTCCTAATTGAGCTGTTAACTTATATTTATTATTGTCAACTACGATCAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCATATGATTTAGCTGCGCTTAAGTATTGGGGTTCAACAACCCACATTAACTTCCCTCTATGTTATTACGAAAAAGAGATGGAAGAGACGAGGAACATGACCAGACAAGAGTTCGTGGCCAACTTGAGGAGGAAAAGTAGTGGGTTTTCGAGGGGAGCTTCTATGTACAGAGGAGTGACAAGACATCATCAGCATGGAAGATGGCAAGCTAGAATAGGAAGGGTTGCAGGAAACAAGGACTTGTACCTCGGAACATTTAGCACTCAAGAGGAGGCCGCCGAGGCCTATGACATCGCGGCAATAAAGTTCAGAGGAACTAGCGCGGTGACGAATTTCGATATTGGTAGATATGATGTGAAGAGGATTTGCTCCAGCTCTAGTTTAATCGGTATTGAACTTGCCAAACGCTCCCCAAAAGAATGCCCACAAGCTACTCTTGAAGATTATCATTCATGTGCGTCGTCCACGACCTCTTCTCAGCAAGTTTTGGCCATTAATGGCGGTGGAACGACTGAAATGCCTGCTGAGTTGGCCTCCGTGACGTGGAGCGGTGGTGGTGATGATCATTGCGTGAACAATGACATATCAATGGAGGATTCTAGTGGCCGACATTCCTCTAATCCGCAAAGCCCAAAAGCCGGTTATGCAGGCGTCAAATGGTGA 1611 44.2 MSNWLGFSLTPHLRIHESFSGREDEEEQNQHGSFPPFSDLPLSSDGTLCVSADPFGRINGVQDWRYMSAVNGGSNPTEESPKLEDFLGSCYVGPPPAPAETKVFCRRPQEEDESRFLSKINSQKEMETRGENMANPSQCLIQSNYPQPLISILDSSYKSWLDQTPLFSDQTTCSSVGTDSSFQSLSLSMSPSSQNVTDNRKRPAVRTLVREPIPRKSIDTFGHRTSQYRDIDGQEDLKLIYGTTVAEKKGKLGREGRVRTLKQIAFLPLHFIVQKKNKWIKSYVLEYKRVLIELLTYIYYCQLRSGGYDKEEKAARAYDLAALKYWGSTTHINFPLCYYEKEMEETRNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDIGRYDVKRICSSSSLIGIELAKRSPKECPQATLEDYHSCASSTTSSQQVLAINGGGTTEMPAELASVTWSGGGDDHCVNNDISMEDSSGRHSSNPQSPKAGYAGVKW 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26924292 26926891 + Bpe012587.1 Bpe03g00674 101179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00674 536 MobiDBLite consensus disorder prediction 507 536 - -
Bpe03g00674 536 CDD AP2 370 430 IPR001471 GO:0003700|GO:0006355
Bpe03g00674 536 MobiDBLite consensus disorder prediction 511 528 - -
Bpe03g00674 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 302 478 - -
Bpe03g00674 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 71 230 - -
Bpe03g00674 536 Gene3D AP2/ERF domain 269 337 IPR036955 GO:0003700|GO:0006355
Bpe03g00674 536 Gene3D AP2/ERF domain 371 430 IPR036955 GO:0003700|GO:0006355
Bpe03g00674 536 SMART rav1_2 286 341 IPR001471 GO:0003700|GO:0006355
Bpe03g00674 536 SMART rav1_2 371 435 IPR001471 GO:0003700|GO:0006355
Bpe03g00674 536 ProSiteProfiles AP2/ERF domain profile. 371 429 IPR001471 GO:0003700|GO:0006355
Bpe03g00674 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 302 478 - -
Bpe03g00674 536 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 71 230 - -
Bpe03g00674 536 ProSiteProfiles AP2/ERF domain profile. 269 335 IPR001471 GO:0003700|GO:0006355
Bpe03g00674 536 SUPERFAMILY DNA-binding domain 370 430 IPR016177 GO:0003677
Bpe03g00674 536 Pfam AP2 domain 372 421 IPR001471 GO:0003700|GO:0006355
Bpe03g00674 536 SUPERFAMILY DNA-binding domain 303 336 IPR016177 GO:0003677
Bpe03g00674 536 MobiDBLite consensus disorder prediction 20 40 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00674 Bpe09g00034 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00674 Bpe-Chr3:26924292 Bpe04g00142 Bpe-Chr4:956633 5.94E-87 dispersed
Bpe03g00674 Bpe-Chr3:26924292 Bpe09g00034 Bpe-Chr9:257062 3.13E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21109 PF00847 AP2 6.20E-10 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00674 K09285 - tcc:18596215 471.855