Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00693 ATGATGTTTCATCCCCAAGGAGCTGCTAGACACACTTGTAGTCTTCTGGCAGTAACTTGTGGAAATGGTCTACAAGAAAAGTATAATAGAGATGTTTTCGAGTATCAGCTTCAGTTTCCTTTCCCGGAGTTAGTTTCTTCCGGCCGTTTAGAGGTCAAGATACTTACTAATCCAAGCAAAAATGAAATTTGTAAAGTTATTGATTCGTACCTACCGAATCTCTTATATTTGCAAGGAGAACAACTTGAAAATGATGAAGTAGGCTCTTTGGTCTTGGCAGATGTGGATTTGTCCTCTGTAGAAGATATTCATGATCTTTTTCGAACCACACTTCCCACCACTGTTTATTTGGAAATCCCAAATGGAGACCAATTGGCTGAAGCACTTCACTCCAAGGGCATTCCTTACGTGATATATTGGAAAAACACATTTTCACGATATACTTCCTGCCACTTTCGTAATGCATTTCTTTCTGTGGTTCAAAGTTCATCCACCCATATATGGGATGCTTTTCAACTTGGGCTGGCATCCTTTAGGATCTACTGTTTGCGAAGCTCCCATGATCGTAGTGATAGACGTAGTGAAGAGCTTGAGCCACATCTTCTTGGGGAGCCGTCTAAGATAAATGTAGAGCCTCCTGAGGTGGAGGTAGGAGAAGATGAAGATGGTTCTCCGCCAACACTTCCCACCATAAACATTCACAATGATGATGTTACCACTAGATTTTTAATTTGCAACGAATCATCTACGGTGGATGAAAGCTTATTGGGATCTTTGGAGGATGGCCTTAATGCCCTCTTAAACATTGAAGTAAGTGAGACGAGACTGAGTTTATACTCACCTTTCAATACTCATTCTGTCTTCTCTGTATCATATAGTGCACCTCCACCATCTCTTCAGGCAGGGACATTTTCTCGTGGTGTTGTGACAATGAGATGTGACTTATCAACTAGTAGTGCTGCCCACATCTCACTTTTGGTGTCTGGTAGTGCACGGACATGTTTTGATGATCAGCTTTTGGAAAATCATATCAAAAATGAAATAATCGAAAATGCTCTTTTAGTTCGCTCTATACTGGACTGTGATGGAAACAAAGTTCCTTTATCTGAACCTCGGAAATCTGAGTCAATCGCTTGTGGTGCAACAGTGTTTGAGGTTTCCATGAAGGTCCCTTCGTGGGCGTTACAGGTGTTGAGGCAGTTGGCACCAGACGTTACTTATCGTAGTTTAGTAGCACTTGGCATTGCAAGTGTTCAGGGATTGCCCGTAGCTTCGTTTGAGAAAGAGGATGCGGAGCGGCTGCTTTTTTTCTGTTCTAGACATGAAAAGGAAATAATTTTAGATGATTTGAGGTTTTCCAGCCCCCCAAGCTGGTTGAAGCCACCAGTGCCTAGCAGAAAGAGATGCCAACTAATCAATGAGAAAATCATCGGTTTATTTGATAGTCCTGCTTATGAAAATATCCTTCCCACCTGCAAAATAAAAGAAGAAAATCAGGATGGTAGCGCAATGAATGGCTTTAAGACGTGTGCTTTACCTGCTCGGCAAAGGTTCAGAGTAGCTGCTTTAAGGCCAATTCCTCGCAGCCATCGACAAAAAATTACACCCTTCTCTGGCATAACCGAGGCAAATGGGCAAAATGGAGGCCAGATTAAAGCTAATATGCTTGTGGTTCCTTCCTCTAAACAGATTACTGCATCAGCAACACAGAGGAAGACATTTTCAAACTTGTCTCAGTCTAAGCAAATTATTTCCTTGAATCCTCTACCTTTAAAGAAACACGGTTGTGACAGGAGCTCAATACATACTTGCTGTGAGGAGAACTTTCTGAAGGACGTGATGGAGTTTCTAATCCTTCGAGGACATAATCGACTTATTCCTCAAGGTGGGTTTGCTGAGTTTCCTGAGGCCATACTAAATGGGAAGCGTCTAGACCTGTACAATCTGTACAAGGAGGTGGTTACAAGAGGAGGCTTTCATGTAGGTAATGGTATCAACTGGAAAGGTCAAATCTTTTCAAAGATGCGCAATTACACCATGACAAACAGAATGACAGGTGTTGGAAATACGTTGAAAAGACATTACGAGACGTATCTTTTAGAGTATGAGTTGGCTCATGACGATGTAGATGGGGAGTGTTGCTTGTTATGTCACAGTAGTGCGGCAGGGGATTGGGTGAACTGTGGCATATGTGGTGAGTGGGCCCATTTTGGCTGCGATAGACGGCAGGGCCTCGGTGCCTTTAAGGACTATGCGAAAACGGATGGGCTAGAATACATATGCCCGCATTGTAGTGTCGCAAACTTCAAAAAGAAATCACAGAAAATTGTGAATGGGTACTCTCAAGGC 2349 42.61 MMFHPQGAARHTCSLLAVTCGNGLQEKYNRDVFEYQLQFPFPELVSSGRLEVKILTNPSKNEICKVIDSYLPNLLYLQGEQLENDEVGSLVLADVDLSSVEDIHDLFRTTLPTTVYLEIPNGDQLAEALHSKGIPYVIYWKNTFSRYTSCHFRNAFLSVVQSSSTHIWDAFQLGLASFRIYCLRSSHDRSDRRSEELEPHLLGEPSKINVEPPEVEVGEDEDGSPPTLPTINIHNDDVTTRFLICNESSTVDESLLGSLEDGLNALLNIEVSETRLSLYSPFNTHSVFSVSYSAPPPSLQAGTFSRGVVTMRCDLSTSSAAHISLLVSGSARTCFDDQLLENHIKNEIIENALLVRSILDCDGNKVPLSEPRKSESIACGATVFEVSMKVPSWALQVLRQLAPDVTYRSLVALGIASVQGLPVASFEKEDAERLLFFCSRHEKEIILDDLRFSSPPSWLKPPVPSRKRCQLINEKIIGLFDSPAYENILPTCKIKEENQDGSAMNGFKTCALPARQRFRVAALRPIPRSHRQKITPFSGITEANGQNGGQIKANMLVVPSSKQITASATQRKTFSNLSQSKQIISLNPLPLKKHGCDRSSIHTCCEENFLKDVMEFLILRGHNRLIPQGGFAEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANFKKKSQKIVNGYSQG 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27034219 27039112 - Bpe025384 Bpe03g00693 101198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00693 783 MobiDBLite consensus disorder prediction 193 231 - -
Bpe03g00693 783 ProSiteProfiles ARID domain profile. 603 707 IPR001606 GO:0003677
Bpe03g00693 783 SMART ARID_2 600 703 - -
Bpe03g00693 783 Pfam ARID/BRIGHT DNA binding domain 606 703 IPR001606 GO:0003677
Bpe03g00693 783 CDD ARID 606 703 - -
Bpe03g00693 783 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 707 769 IPR013083 -
Bpe03g00693 783 CDD PHD_ARID4_like 713 764 - -
Bpe03g00693 783 Gene3D - 598 706 IPR036431 GO:0003677
Bpe03g00693 783 SUPERFAMILY FYVE/PHD zinc finger 706 771 IPR011011 -
Bpe03g00693 783 SUPERFAMILY ARID-like 606 718 IPR036431 GO:0003677
Bpe03g00693 783 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 2 780 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00693 - - - zju:107435388 1100.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00693 Bpe10g00717 CCT
Bpe03g00693 Bpe10g00717 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00717 Bpe-Chr10:13562254 Bpe03g00693 Bpe-Chr3:27034219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g01140 CCT 27 384 ARID Transcription Factor Family AT1G04880 57.9 4.0e-102 368.6
Bpe04g01069 CCT 30 382 ARID Transcription Factor Family AT1G04880 53.4 1.8e-86 316.6
Bpe02g00331 . 16 337 ARID Transcription Factor Family AT1G76110 60.6 8.0e-103 370.5
Bpe03g00693 CCT,ECH 2 779 ARID Transcription Factor Family AT3G43240 56.4 4.2e-253 870.9
Bpe10g00717 CCT,ECH 1 770 ARID Transcription Factor Family AT3G43240 56.0 6.4e-246 847.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21113 PF01388 ARID 5.70E-14 CL0123 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00693 Bpe_Chr03 FPKM 8.267826 8.051362 7.278828 7.34 16.175255 15.56438 15.538771 7.32566 5.723671 5.428859