Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00704 ATGCAATTAGTGTCACATGATAGTCATGGTGAAGATTCTTCCGAAAGTGAACCCATCTTGAGACAGTCCGAGCAAATATCATTAGAATCTACATCTTCCTCTGAGATTACTTCAGTTGTAGAAGATGTTAATGGTGATGATTTACAAAATCAAGAGATTGATGAAACTTCTCATCTGGTGAATGTGGATCAATCTCTATGTCGTATATGTCTCGACACTGGAGGGGAAGATTTGATTGCTCCCTGCCATTGCAAAGGCACCCAAAAGTTTGTTCATAGATCTTGCCTTGATAATTGGAGGTCTACAAAGGAGGGATTTGCTTTTTCTCATTGTACAGAATGCAGAGCAGTATTCATCTTGCGGGCAAATGTCCCTCCTGATAGATGGTGGTTGAGATTGAAATTTCAGTTCCTTGTTGCAAGGGATCATGCATTCATCTTTATCATTGTGCAGCTGATAGTGGCATTCTTGGGAGTATTGGTGTACAAATTCTACGGTGAGGAACTAAGAGAAATGTTTGGTTACGAAGAACACCCATATGGTTTCTACGCCATGGCCGTTTTGGCTATCATTTTGGTCGGTCTGCTCTATGGTTTCTTCATAGCTATTATATGCGGACAGAGGATCAATGAACGCCATTATCACGTTCTTGCCAAACAAGAACTAACCAAGGAGTACGTGGTAGAAGATCGAGAATGCCATAAAAACACCCCCGAGCTCGATGCAAGCCACATCATGGAGCTAAAGATGTTGGGCCTGTATTAG 765 41.7 MQLVSHDSHGEDSSESEPILRQSEQISLESTSSSEITSVVEDVNGDDLQNQEIDETSHLVNVDQSLCRICLDTGGEDLIAPCHCKGTQKFVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDRECHKNTPELDASHIMELKMLGLY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27205001 27207484 - Bpe012615.1 Bpe03g00704 101209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00704 254 Pfam RING-variant domain 67 114 IPR011016 GO:0008270
Bpe03g00704 254 CDD RING_CH-C4HC3_MARCH 67 115 - -
Bpe03g00704 254 MobiDBLite consensus disorder prediction 1 36 - -
Bpe03g00704 254 ProSiteProfiles Zinc finger RING-CH-type profile. 59 121 IPR011016 GO:0008270
Bpe03g00704 254 PANTHER OS02G0132300 PROTEIN 2 253 - -
Bpe03g00704 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 119 IPR013083 -
Bpe03g00704 254 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 253 - -
Bpe03g00704 254 SUPERFAMILY RING/U-box 61 118 - -
Bpe03g00704 254 SMART ringv_2 66 115 IPR011016 GO:0008270
Bpe03g00704 254 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00704 Bpe-Chr3:27205001 Bpe06g00062 Bpe-Chr6:729570 6.71E-43 dispersed
Bpe03g00704 Bpe-Chr3:27205001 Bpe01g00187 Bpe-Chr1:1123780 4.97E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00704 - - rcu:8259964 421.779