Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00717 ATGCTCGGCAGCTTAGTTTTTCAATCCCCTGTCAACTCAAATCCTGCTCCGTCCTCTTCCATGAAGACGAAACGCGCCGATCGGGACCCCCTCGATTCCTCCGTCGCCGATCACTCCGTCAAGAGGCAGAACCCCGGAGTTAATTTTCAGGGCGGGACTAGTGTTTCCGGCGATCATAGCGTCGAGGATCGCGAAGAAGAAGAAGAGCACCTGCCGCGAGAAGAGGCGGAGCCGCTTCTTGACGGAGAGACGACCGGGTTGAGACTTTTGGGGCTCTTGCTACAATGCGCTGAGTGCATAGCCGTGGATAATCTTCAGGAAGCTAGCGACCTCTTGCCGGATATCTCCGAGCTCTCCTCGCCATTTGGTTCCTCTCCCGAAAGGGTTGGCGCGTACTTTGTGCACGCCCTTCAGGCGCGCGTGATAAGCTCTTGTTTAGGTTCTTATTCGCCATTGACGATCAAATCTCTCAATCTAACTCAGTCTCAGAAAATCTTCAATGCTTTTCAATTCTACAACTCCGTCAGTCCTTCGATCAAATTCTCGCACTTCACGGCCAATCAAGCGATTTTCCAAGCTTTGGACGGCGAGGATCACATCCATATTATTGACCTCGACATAATGCAAGGCCTTCAATGGCCGGGATTGTTCCACATCCTCGCCTCCCGATCGAAGAGGATCCGGTCGGTGAGAATTACCGGCTTCGGATCGTCGGCTGAGCTACTTCAGGCGACCGGAAGGAGACTTGCGGATTTTGCGAGCTCTCTACGGCTGCCATTCCAATTTCATCCATATGAGGGGAAAATCGGTAATCTAACCGATCTGAGCCAACTGGAGGTTCGGCCGAACGAGGCTACGGTGGTGCACTGGATGCAGCATTGCTTGTACGACATAACGGGGAGCGATCTTGGGACGTTGAGATTATTAACTTTGTTGAGACCGAAATTGATCACCATCGTTGAACAGGATCTCACCCACGGCGACAGTTTCTTAGGGAGGTTCGTCGAGGCGTTGCATTATTACAGCGCGTTATTCGACGCGCTCGGGGATAGTTTGAGTGCAGACAGCGTAGAGAGGCATGTGGTGGAACAGCAACTGTTCGGGTGTGAGATTAGGAACATCGTGGCCGTGAGTGGCCCCAAGAGGACCGGAGAGGTCATGGTAGAGAGGTGGGGGAACGAGCTTAGACGGGTCGGATTTCGACCTGCTTCTCTCGCCGGAAACCCTGCTGCTCAGGCGAGTTTGCTGCTGGGGATGTTCCCTTGGAAAGGTTACACATTGGTCGAGGAAAATGGTTGCTTGAAGTTGGGTTGGAAGGATCTTTCTCTGCTCACCGCCTCCGCTTGGCAGCCAGCGGATTGA 1362 53.23 MLGSLVFQSPVNSNPAPSSSMKTKRADRDPLDSSVADHSVKRQNPGVNFQGGTSVSGDHSVEDREEEEEHLPREEAEPLLDGETTGLRLLGLLLQCAECIAVDNLQEASDLLPDISELSSPFGSSPERVGAYFVHALQARVISSCLGSYSPLTIKSLNLTQSQKIFNAFQFYNSVSPSIKFSHFTANQAIFQALDGEDHIHIIDLDIMQGLQWPGLFHILASRSKRIRSVRITGFGSSAELLQATGRRLADFASSLRLPFQFHPYEGKIGNLTDLSQLEVRPNEATVVHWMQHCLYDITGSDLGTLRLLTLLRPKLITIVEQDLTHGDSFLGRFVEALHYYSALFDALGDSLSADSVERHVVEQQLFGCEIRNIVAVSGPKRTGEVMVERWGNELRRVGFRPASLAGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPAD 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27303309 27304670 - Bpe012626.1 Bpe03g00717 101222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00717 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 60 450 IPR005202 -
Bpe03g00717 453 MobiDBLite consensus disorder prediction 37 57 - -
Bpe03g00717 453 MobiDBLite consensus disorder prediction 1 21 - -
Bpe03g00717 453 MobiDBLite consensus disorder prediction 58 80 - -
Bpe03g00717 453 MobiDBLite consensus disorder prediction 1 80 - -
Bpe03g00717 453 PANTHER SCARECROW-LIKE PROTEIN 23 60 450 - -
Bpe03g00717 453 ProSiteProfiles GRAS family profile. 80 450 IPR005202 -
Bpe03g00717 453 MobiDBLite consensus disorder prediction 22 36 - -
Bpe03g00717 453 Pfam GRAS domain family 91 450 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00947 Bpe-Chr2:8525031 Bpe03g00717 Bpe-Chr3:27303309 3.34E-153 dispersed
Bpe03g00717 Bpe-Chr3:27303309 Bpe06g00551 Bpe-Chr6:16542550 2.66E-112 dispersed
Bpe03g00717 Bpe-Chr3:27303309 Bpe02g02000 Bpe-Chr2:21717752 1.85E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21114 PF03514 GRAS 4.00E-112 CL0063 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00717 - - zju:107404603 659.833