Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00734 ATGTCGGAAGGGGAGTACGGCGATCACAGTCATCTGCTTGTATCAACGGAGGCTCATGTCGAGGACAATGACTTGGAAGCTCGGATTAGAGATGGCGGCGCAGATGGAGTTCAGAGCCACAATTACCGGAGCGGCGGCGAAAGATTAGCCGGAGGCTTTATGGATCTGTTTAAGCATTTGAATAAAGCGAGCTTTTCTAATCGCCGTCACAGTTTCAAGCGTCTAGACTGGGACGGCAATCCTGCTAATGAATCCGCATTAACCGCGGGTAGAGGTATGAATAATCATCATCATCATCATCGCTCTTACAATGATGATTTTCATCTTCATATTCATCATGCCCCGACTGTCGCCACCACCAGTTATGCTGACGCTGATGACGTTCTAGATGACTCCGCCCCTCCAGAATGGGCATTGCTCCTTATTGGCTGCCTCGTTGGCCTCGCTACTGGTCTCTGCGTTGCTGCATTTAACAAAGGGGTGCACGTGATTCATGGATGGGCATGGGCTGGCACTCCAAATGAGGGTGCCGCTTGGCTTCGTTTACAGAGGTTGGCTGATACTTGGCATCGCATTCTCTTAATACCAGTCACTGGAGGTGTAATTGTTGGGATGATGCATGGCTTGGTTGAAATTCTCTATGAAATAAAGCAACCAAGTCCTTCTCAAAGGCAAGGATTTGATTTGCTTCGTGGAGTTTTTCCCACAGTAAAGGCCATTCAAGCAGCCATCACTTTAGGTACTGGTTGTTCATTAGGTCCTGAAGGACCTAGTGTGGACATTGGAAAATCTTGTGCAAATGGATTCTATGTGATGATGGAAAACAACAGCGAAAAGATAAAAATAGCCTTTGTTGCTGCTGGTGCAGCTGCAGGAATAGCTTCAGGTTTTAATGCAGCTGTTGCCGGTTGCTTTTTTGCTATTGAAACTGTTTTAAGGCCTCAACGAGCTGAAAATTCACCACCATTTACAACTGCTATGATTATTCTTGCTTCTGTAATCTCATCCACTGTGTCAAATGTTTTACTTGGGACACAGTCAGCTTTTACAGTTCCTACATATGATTTGAAGTCTGCCGCAGAATTACCTTTATACCTGATATTGGGCATGCTATGTGGAGTTGTGAGTGTAGCTGTGACTTGGTTAGTCAGTTGGTTTCATAAATCATTTGAGCTTCTCAAGGACAGATTTAGCCTCCCAGCTGTTGTCTGTCCTGCTGTAGGCGGTTTAGGAGCTGGAATAATTGCCCTCAAGTATCCAGGAATTCTTTATTGGGGCTTCACAAATGTTGAAGAAATTCTACATACTGGAAAGAGTGCCTCTGCTCCTGGAATATGGCTATTAACTCAATTAGCAGCAGCAAAGGTTGCTGCAACTGCGCTATGCAAGGGTTCTGGGCTTGTGGGTGGCCTTTACGCCCCAAGTCTAATGATTGGTGCAGCCGTTGGTGCTGTATTTGGAGGTTCAGCAGCAGAAGTTATCAACTCTGCCATTCCTGGAAATGCAGCTGTTGCACAGCCTCAAGCATATGCACTGGTTGGAATGGCTGCTACACTCGCTTCTGTTTGTTCAGTCCCCTTGACATCAGTTCTACTTCTCTTTGAGCTGACAAAAGATTACAGGATTCTGCTTCCTCTCATGGGAGCAGTTGGATTAGCCATATGGGTTCCTTCAGTGACAAAGCAAGCAAAAGAGATTGAAGTTTCTGATAGTCGTCGCTCTGTCAGAAACTACTCTCCTCTATCTCCTTCTGCACCAAAACATGATATTACAAGGAGACAAAATGATGCAAGCAATGATGTGGAACTCTCAACTATTGGAAATGTATCAGACAGTGAAACAATTGATGAAGATATTCTTATGGAAGATTTTAAGGTTTCTCAGGCTATGTCGAAGAACTTCCTTAAGATTACATTGTCGACAAGCTTGAAAGATGCATTGAAATATATGAATGAAAGTCAACAGAACTGTGCTCTTGTGGTGGACGATGGAGATTTTCTTGAGGGAATCTTAACAAGTGGTGACCTTAGACGGTGTCTTTCTACACTGTCTGGTGAAGCTTCTTCAGAGGGGGATGCAAGTGCTGTGTCCTCTATTTGTACTAGAGGGATAAGTTATCGTGCCCGAGAACGTGGGCTTCTAACTTGTTACCCAGACACTGATTTGGCAACGGCCAAAGATCTCATGGAGGCTAAGGGTATAAATCAGTTACCCGTCGTAAAGCGCAGTGGAGCATCCAAGAAGCATTGGAAACGAAGAATTGTTGCTGTTCTCCACTACGAATCAATACAGAATTGTCTCAGAGATTTCATCAATCACAGGAAATCAGTCTATCAACGTGGCAAAGCCATCAATATCGGGAAAATAACAGAGGGTCATTAA 2382 44.58 MSEGEYGDHSHLLVSTEAHVEDNDLEARIRDGGADGVQSHNYRSGGERLAGGFMDLFKHLNKASFSNRRHSFKRLDWDGNPANESALTAGRGMNNHHHHHRSYNDDFHLHIHHAPTVATTSYADADDVLDDSAPPEWALLLIGCLVGLATGLCVAAFNKGVHVIHGWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMHGLVEILYEIKQPSPSQRQGFDLLRGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYVMMENNSEKIKIAFVAAGAAAGIASGFNAAVAGCFFAIETVLRPQRAENSPPFTTAMIILASVISSTVSNVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGVVSVAVTWLVSWFHKSFELLKDRFSLPAVVCPAVGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVAATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQAKEIEVSDSRRSVRNYSPLSPSAPKHDITRRQNDASNDVELSTIGNVSDSETIDEDILMEDFKVSQAMSKNFLKITLSTSLKDALKYMNESQQNCALVVDDGDFLEGILTSGDLRRCLSTLSGEASSEGDASAVSSICTRGISYRARERGLLTCYPDTDLATAKDLMEAKGINQLPVVKRSGASKKHWKRRIVAVLHYESIQNCLRDFINHRKSVYQRGKAINIGKITEGH 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27433462 27438433 - Bpe012642.1 Bpe03g00734 101239

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00734 793 CDD Voltage_gated_ClC 147 553 - -
Bpe03g00734 793 MobiDBLite consensus disorder prediction 575 596 - -
Bpe03g00734 793 Gene3D Clc chloride channel 126 574 - -
Bpe03g00734 793 Pfam Voltage gated chloride channel 231 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe03g00734 793 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 1 783 - -
Bpe03g00734 793 SMART cbs_1 712 768 IPR000644 -
Bpe03g00734 793 SMART cbs_1 633 681 IPR000644 -
Bpe03g00734 793 Gene3D - 611 768 IPR046342 -
Bpe03g00734 793 SUPERFAMILY CBS-domain pair 621 744 IPR046342 -
Bpe03g00734 793 SUPERFAMILY Clc chloride channel 135 560 IPR014743 -
Bpe03g00734 793 ProSiteProfiles CBS domain profile. 630 688 IPR000644 -
Bpe03g00734 793 CDD CBS_pair_voltage-gated_CLC_euk_bac 630 763 - -
Bpe03g00734 793 Pfam CBS domain 626 680 IPR000644 -
Bpe03g00734 793 Pfam CBS domain 712 744 IPR000644 -
Bpe03g00734 793 PRINTS Chloride channel signature 290 309 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe03g00734 793 PRINTS Chloride channel signature 526 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe03g00734 793 PRINTS Chloride channel signature 467 487 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe03g00734 793 PRINTS Chloride channel signature 238 257 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe03g00734 793 PRINTS Chloride channel signature 508 524 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Bpe03g00734 793 PANTHER CHLORIDE CHANNEL PROTEIN CLC-F 1 783 - -
Bpe03g00734 793 ProSiteProfiles CBS domain profile. 709 776 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00734 - - - csv:101212254 1026.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00734 Bpe09g00096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00734 Bpe-Chr3:27433462 Bpe07g00690 Bpe-Chr7:13530435 1.22E-131 dispersed
Bpe03g00734 Bpe-Chr3:27433462 Bpe09g00096 Bpe-Chr9:661404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00734 Bpe_Chr03 FPKM 0.482678 0.352108 0.656989 0.977852 2.167021 1.739312 2.190474 1.228777 0.933298 0.877782