Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00737 ATGGCGATATTGCTGAGGAAAATGTGGGAATCGGTGTCCTGCCGTTCGGATACGAATTCCGCGATGTCATCATCTGATAGTCAGCCGGCGGCAGAATCGTCTTTAGGAGAATTCGATCGTGTTCCTACCGATGTTCTAATGAAGATACTGCGCTTGATTGGGCCAAAGGATGCGGCCAAAATGAGTTTGCTATCCACCTCTTGGAAGTCACTGGTTTCCGATGATCGCCTTTGGATTTTCTTCCTTCAGACTCAGCAAGAAGAGTCTTGGGACTCAATTTACTTCGGGGAAACCACTTTAGGATGGGGTTATCCTCTTCAAACATACTCCAATCAGACCCAACAATTGTCATTCATGCGAATTTATGGAAAACGGGCACAAGTACCAGGTTCTGTTATTATTGACGGTGGCTCTGGCTATTGCAAATTTGGTTGGAGCCAATATGCTTGTCCATCTGGGCGATCTGCAACCTTTTTGGAATTTGGTAACATCGAGTCGCCTATGATGCGGGTCAAACCATCATTGCACCCAGTAGTTGTATCAATACCGATATGTCATTATGATGATACTGAATCAGCCGTAGCATCTAGGAGGCAGCTCAAAGAAGCCATTCACACTGTGCTTTTTGACATGAATGTTCCCGCTGTTTGTGCTGTTAATCAGGCAGTTTTAGCCCTATATGCAGCAAGAAGAACATCGGGAATTGTAATTAATATTGGATTCCAAGTTACATCTGTTGTTCCTATTTTTCATGGTAAAGTGATGCGCAAGGTTGGGGTTGAAGTTGTGGGTCTGGGAGCACTAAAAATTACTGGATTCCTTAGAGAGCTGATGCAACAAAACAATATATACTTTGAATCAATGTACACAGTTCGTGCACTTAAAGAGAACCTTTGTTATGTTGCTGTTGATTATGAAGCTGAGTTATTGAAAGATACAAAAAGTTCATATGAAGCTGCCGGAGAAGGTTGGTTCACTCTGTCAAAAGAACGATTTCAAGCTGGAGAGATTCTTTTCCAGCCACGAATGGCAGGACTCCGTGCGATGGGCTTGCACCAAGCTGTAGCTCTCTGTATAGACCATTGTTATGAAGCTGAATTAGCAGGTGATGATTCTTGGTTCAAGACGGTAGTTCTATCCGGTGGAAGTGCTTGCTTGCCTGGTCTTGCAGAGAGGTTACAGCAGGAACTTTGCAAACTTCTTCCTCCAGCTGTTAGCAATGGTTTAAGAGTCATTCCTCCTCCATACGGTGCTGAATCTGCATGGTTTGGCGGGAAACTCATAAGCAATCTAAGCGTCTTTCCTGGTTCCTGGTGTACAACGAAAAAGCAATTCCGGCAGCAATCACGACAAAACATTGTATGGTGA 1368 44.01 MAILLRKMWESVSCRSDTNSAMSSSDSQPAAESSLGEFDRVPTDVLMKILRLIGPKDAAKMSLLSTSWKSLVSDDRLWIFFLQTQQEESWDSIYFGETTLGWGYPLQTYSNQTQQLSFMRIYGKRAQVPGSVIIDGGSGYCKFGWSQYACPSGRSATFLEFGNIESPMMRVKPSLHPVVVSIPICHYDDTESAVASRRQLKEAIHTVLFDMNVPAVCAVNQAVLALYAARRTSGIVINIGFQVTSVVPIFHGKVMRKVGVEVVGLGALKITGFLRELMQQNNIYFESMYTVRALKENLCYVAVDYEAELLKDTKSSYEAAGEGWFTLSKERFQAGEILFQPRMAGLRAMGLHQAVALCIDHCYEAELAGDDSWFKTVVLSGGSACLPGLAERLQQELCKLLPPAVSNGLRVIPPPYGAESAWFGGKLISNLSVFPGSWCTTKKQFRQQSRQNIVW 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27480402 27484828 - Bpe012645.1 Bpe03g00737 101242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00737 455 Gene3D - 26 102 - -
Bpe03g00737 455 SMART actin_3 129 445 IPR004000 -
Bpe03g00737 455 PANTHER ACTIN-RELATED PROTEIN 8 91 452 - -
Bpe03g00737 455 CDD NBD_sugar-kinase_HSP70_actin 132 262 - -
Bpe03g00737 455 Pfam Actin 190 445 IPR004000 -
Bpe03g00737 455 SUPERFAMILY F-box domain 29 85 IPR036047 GO:0005515
Bpe03g00737 455 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
Bpe03g00737 455 SMART fbox_2 41 81 IPR001810 GO:0005515
Bpe03g00737 455 PANTHER ACTIN 91 452 IPR004000 -
Bpe03g00737 455 Gene3D - 169 447 - -
Bpe03g00737 455 Gene3D Actin; Chain A, domain 4 265 348 - -
Bpe03g00737 455 SUPERFAMILY Actin-like ATPase domain 231 442 IPR043129 -
Bpe03g00737 455 Gene3D - 222 420 - -
Bpe03g00737 455 Pfam F-box domain 38 79 IPR001810 GO:0005515
Bpe03g00737 455 SUPERFAMILY Actin-like ATPase domain 131 237 IPR043129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00737 K16616 PARP8; actin-related protein 8, plant - csv:101218880 692.189
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00737 Bpe-Chr3:27480402 Bpe06g00278 Bpe-Chr6:13735910 2.51E-40 dispersed
Bpe03g00737 Bpe-Chr3:27480402 Bpe04g01456 Bpe-Chr4:21189952 5.82E-40 transposed
Bpe03g00737 Bpe-Chr3:27480402 Bpe08g00106 Bpe-Chr8:572280 8.58E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006156 1 1 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 0 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00737 Bpe_Chr03 FPKM 9.450451 13.417773 9.547138 15.252875 8.165201 6.553442 6.243147 8.479072 9.85469 15.999851