Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00775 ATGCTTCCACAGCGCATGATGAGCACCATTCTTGATCAGCCAAAGAAGCTCGCCTACTTGATTGACCTTGTTAATCTTCCTTCAAATCTGAGAAACTTTGTGGGGCAGTCTCAAATTTCTCGTTTGGGCTGTTTTATGCGTGTTTGGTCTTATATCATTTCTTGCTCTTCTAATGCAGATCCAAACAACAAGAACGGGGTTATTTGTGATGAAAAGTCGAGAAGTATATTGCTAGGCAAGCCTAACATCGAGCTTGGTGAACTCCCTGCCTTGATCAAACTTCATTTTCCAAAAGAACGCAAGTAA 306 41.5 MLPQRMMSTILDQPKKLAYLIDLVNLPSNLRNFVGQSQISRLGCFMRVWSYIISCSSNADPNNKNGVICDEKSRSILLGKPNIELGELPALIKLHFPKERK 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27741607 27741952 - Bpe012685.1 Bpe03g00775 101280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00775 101 Pfam SWIB/MDM2 domain 24 96 IPR003121 -
Bpe03g00775 101 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 2 100 - -
Bpe03g00775 101 Gene3D SWIB/MDM2 domain 19 101 IPR036885 -
Bpe03g00775 101 PANTHER OS09G0133000 PROTEIN 2 100 - -
Bpe03g00775 101 CDD SWIB-MDM2_like 30 96 - -
Bpe03g00775 101 SUPERFAMILY SWIB/MDM2 domain 16 98 IPR036885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00775 - - - vvi:100247022 152.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00775 Bpe09g00154 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00775 Bpe-Chr3:27741607 Bpe07g00266 Bpe-Chr7:1919505 2.44E-08 dispersed
Bpe03g00775 Bpe-Chr3:27741607 Bpe09g00154 Bpe-Chr9:1045898 1.23E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g567 . . . . Bpe09g00154 . Bma10g00573 Bma13g01077 . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1176 Cone15ag1189 . . . . Blo07g00886 . . Bda12g00932 . Bpe03g00775 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006068 1 1 1 3 2 1 0 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 0 2 1 0 0 5 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21121 PF02201 SWIB 2.10E-11 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00775 Bpe_Chr03 FPKM 18.930483 20.847893 24.538027 24.361713 29.574812 27.146544 29.522142 25.324881 27.281393 23.789829