Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00780 GCAATGAACAAGCTGAAGAAATCTCAGATTCTGAGGCTTTCTGTGCTGGCTGTGTTTCTTACAATCACTCCTCTTTTGTCCTCATCCCTAAGGCCTACATATCTCTACTTTGTTTTCAATCTTCTCATCATAGCTCTGGGAGCTGAAGCTGGCTTTCTCTCAGACGACAAAAAGTCTTCCTCTCCTCCTCCTCCTCCTCATCTTTCTTCTTCAAATCCTGCAGCCATGGCTTCCGCAGAACATGCCGGAGAGAAGGACAGGCTTCATCTTTCTTCTCCAGATCAGACCTCCGACAAAAAAGTAAAGATTTTTGAGAAATCTGGGTCGGAAAAAATAGTGGGTAGTTACCAGAAAGTGAAGAAATGCCCTTCTACTCCAAGTTTGTTCTTCATTGGAGGTGGGGGAGAAGAAGACGAAGACGAAGGTTACGAAGAGGCAATCGAAGAAGAAACTGGAGGGCTTAATGGGCAAGAGCTCTTCACGAAAGCTGAGACATTTATTGGAAACTTTTACAAACATTTGAAGATGCAGAGAGAAGAATCATGGAAAAAAATTAATGGGTTTTACCAGAAAGCCTTTTAA 582 42.78 AMNKLKKSQILRLSVLAVFLTITPLLSSSLRPTYLYFVFNLLIIALGAEAGFLSDDKKSSSPPPPPHLSSSNPAAMASAEHAGEKDRLHLSSPDQTSDKKVKIFEKSGSEKIVGSYQKVKKCPSTPSLFFIGGGGEEDEDEGYEEAIEEETGGLNGQELFTKAETFIGNFYKHLKMQREESWKKINGFYQKAF 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27773991 27774572 + Bpe012691.1 Bpe03g00780 101285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00780 193 PANTHER OS01G0532300 PROTEIN 2 191 - -
Bpe03g00780 193 MobiDBLite consensus disorder prediction 80 100 - -
Bpe03g00780 193 Pfam Cotton fibre expressed protein 157 187 IPR008480 -
Bpe03g00780 193 PANTHER OS01G0532300 PROTEIN 2 191 - -
Bpe03g00780 193 MobiDBLite consensus disorder prediction 54 100 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00780 - - - tcc:18593453 192.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00780 Bpe-Chr3:27773991 Bpe14g00343 Bpe-Chr14:3304782 2.26E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g553 . . . . . . Bma10g00567 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1178 . Csa03g00493 . Cme06g02856 . . Bda05g00708 . . Bpe03g00780 . . . . . . . . . Cpe14g00723 . . . . . . . . . . . . . . . Lsi05g00578 . Chy06g01833 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012676 1 0 0 2 2 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00780 Bpe_Chr03 FPKM 1.378128 1.561191 4.240221 4.391751 40.764889 41.814941 44.213795 2.294496 2.464945 2.786657