Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00784 ATAGAAGAGTTAAAGGCTGAAATGGAGAGAACTAATTCGGAAAACAATCGTTTGAGATACATGCTCAATCAGATGAGTAACAATTATTACACCCTTCAGATGCAGCTTCTTGCTCTCACGCAGAAGCAACAAATTAACAAAAATCATGAACAATTCAAACGTCACGAGATGATTAGTGAACGATCTAAGGAAGATAATAAGAACAACGAAGGAAGTGGAATATGTACTGGAAAATTGATGGATTTGGTTCGTCAAAAAGATGATCAAATTTCAAATTCTTCTTCAGAAATAAAGTCCGCTGAAAGTTTTGGGACTCCAAAAGAAAATCACATGGCGTTTAAAATTCACAGCCCAAGTGAGGAAGGTTTGGAGAGGGTGGATAATAATGAGAGAAAAAGTAGGGTTAGTGAGAGAAATGTAGGAGAGGAAAGCTCAAACCAAGCTGCTATTTCATGGCAACTGCCTAACAACGTAGATCGGCCATCCGAATCGATGATGATGATGAAGAAAGCTCGAGTATCGGTCCAAGCACGATCCGAGACTTCCATGATATCAGATGGGTGTCAATGGAGGAAGTATGGACAGAAAACGGCAAAAGGGAATCCATGTCCTCGAGCTTATTATCGATGTACAATGGGAGTTAATTGCCCCGTTCGAAAGCAAGTACAGAGAAACGCAGGAGATCAAACGATTCTGATAACCACGTACGAAGGACAGCACAACCATCCTCTTCCTCAAGCGGCAATGGCTATGGCCACAACCACTTCAGCCGCCGCATCAATGCTCCTCTCTGGTCCAATGGCTAGCCTAGATGGCTCAATAAACCCAACACCTTTTGCAAGATCCATGCTTAACTTCTCACCAAATTTAGCCACGCTTTCAGCTTCAGCCCCGTTTCCTACTGTCACTTTAGATCTCACTGAAAGAGCACAAGATCTTACCCAAAATTCCTCATCTTTCCCAGAAAATATTTCTCGGTTTTCGGGCTCCGAACTGTCTAGTCATGGACATGGTCGGACTCAGATGCCGTCAATGACGGATACAGTTAGCGCAGCCGCTGCTGCCATTACAGAAGACCCTAATTTGAGAGCAGCTCTTGTGGCTGCCATTTCCTCAGTCATCGGAAACGCTCCGTTGAGCAGGAATATTAGTAGTTCCACAAACAATGACGAATAA 1176 43.37 IEELKAEMERTNSENNRLRYMLNQMSNNYYTLQMQLLALTQKQQINKNHEQFKRHEMISERSKEDNKNNEGSGICTGKLMDLVRQKDDQISNSSSEIKSAESFGTPKENHMAFKIHSPSEEGLERVDNNERKSRVSERNVGEESSNQAAISWQLPNNVDRPSESMMMMKKARVSVQARSETSMISDGCQWRKYGQKTAKGNPCPRAYYRCTMGVNCPVRKQVQRNAGDQTILITTYEGQHNHPLPQAAMAMATTTSAAASMLLSGPMASLDGSINPTPFARSMLNFSPNLATLSASAPFPTVTLDLTERAQDLTQNSSSFPENISRFSGSELSSHGHGRTQMPSMTDTVSAAAAAITEDPNLRAALVAAISSVIGNAPLSRNISSSTNNDE 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27807468 27809261 + Bpe012696.1 Bpe03g00784 101289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00784 391 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 2 377 - -
Bpe03g00784 391 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe03g00784 391 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 377 IPR044810 GO:0003700
Bpe03g00784 391 MobiDBLite consensus disorder prediction 117 139 - -
Bpe03g00784 391 MobiDBLite consensus disorder prediction 313 343 - -
Bpe03g00784 391 MobiDBLite consensus disorder prediction 117 161 - -
Bpe03g00784 391 Gene3D WRKY domain 169 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe03g00784 391 ProSiteProfiles WRKY domain profile. 179 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe03g00784 391 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe03g00784 391 Coils Coil 1 28 - -
Bpe03g00784 391 MobiDBLite consensus disorder prediction 57 78 - -
Bpe03g00784 391 MobiDBLite consensus disorder prediction 140 160 - -
Bpe03g00784 391 SMART WRKY_cls 184 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00784 - - - sind:105167998 311.997
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00784 Bpe09g00165 CCT
Bpe03g00784 Bpe09g00165 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00784 Bpe-Chr3:27807468 Bpe08g00012 Bpe-Chr8:79830 9.70E-83 dispersed
Bpe12g00210 Bpe-Chr12:1671575 Bpe03g00784 Bpe-Chr3:27807468 1.26E-81 wgd
Bpe15g00723 Bpe-Chr15:17745681 Bpe03g00784 Bpe-Chr3:27807468 2.23E-85 wgd
Bpe03g00784 Bpe-Chr3:27807468 Bpe09g00165 Bpe-Chr9:1105689 2.11E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g540 . . . . Bpe09g00165 . Bma10g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00896 . Bda05g00712 Bda12g00922 . Bpe03g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016612 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21123 PF03106 WRKY 5.60E-24 CL0274 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00784 Bpe_Chr03 FPKM 4.820488 6.419963 2.169224 1.57557 14.697901 14.302237 16.907623 4.958476 4.128027 3.487032