Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00786 ATGGAGGAGGTCTCCTTTGTGTCCAAAGCGAGGACCGCTTTTCATTCTGCGGCAGCTAAAGCGGAGCGTGTTTTGACAGATTTCAAATCTGATCGAGGAGATTCGGATAAACAGTCGCCAAAGGATTTGTTAAATCGAGCTGAGGATGAGTATCAGAAGAAGAACAACAATAAAAAGTGTGACACTGAATCGAAGCATTCCAGCTGGACTCACGTTGGCACCAAACAAGATTGGCAAGATAGGTTCAAGAATATTAAATTAGGGAGGAAAATAGTCGAGGATACAGAGAAAAGTGAAGATTCAGCTATGGCCGTTCCATTTTATGATGAGAATTTGTATCTGCTGAACATGAAAAATGATCTTGAGGCAAAGGTTTCTGAAGTGATTCCATCAGTGGAAAGTTTTATAGCTGCCAGTGGAAAGAGTGTTCCCCCGATTTATGTGCTGAAGCAATTGGCAATAGCTGTGGAGGCTGGCAAAAAATACAAGTCCATGAAAGATTTACTTGCATCATCTGGAGATTCTTCACCTGCTAGGGAGAGATCCAGTTTAAGTCTTGCAGCAATGAAATCATTACTGCTGCGGGATAAGGAGGAAAGGTTTTCAACCGAGTTTTCGAAAGATGATAGAGTTAATTTACTAATTCAATCTCTATTTGATGCAGATGGAAATTTTCTCGAAAGGAATTTTGGCTCTGGAATCGAAGACATCACGTTTACATCTTTGCACAAAGATATTCATGGTTCTCCTCCCCAAAGCCTAATTGTTAAGATATCTGAAGTCATGGGAAGCTTCAAAGCAATGCGAAAAATGGCACTTTTTTGGTGCAAGGCTGTCACTGAAATGAGACGGCTTTGGTCTGAAGGGCAATATATACCATGCATCCCTAAAGATGATATCCCAGATCTACATTCCTGTCTTTTATACCAGCAATTCCAGGTCATCAATTGTTGCCTGTCTAGGAAAAGGCGTCGTGATATAGCGACTGAATCATTAGACTATGCGATAAGTAAGGCTAGTTCTGATATGGAATTGGCTGTTTCACAAGCTATAGATCCTGTAAGGCCCATCTTATATGCCAGAATAAGCACTGGGGAACTCATTCTTCGATTAGGGGCTGCTCAACCATTCAATAACCTAAACATGTTGGAAACTGGCGAACCTGTGTATTCTCCCATTACTCAGGAAGAGCCGTTGCTTACAGAAGATGTTATTAAAGAAACAGAGGAATTTGTTCTTCGTACTGGGAGTGTCGGGGCCGGATGTTCTCAACTTCTCTCGGATATGCAGGCTTTCAAGGCTGCAAATCCGGGTTGTATTTTGGAAGATTTCGTGAGATGGATCTCCCCTCCTGATTGGACAGAAAATGAACAAAGTTCTGATGCTAAAGATGACACTCCTAGTGGTGACTTAAGAGGTCAATTAAGTAGTCGAATGCAAAAAGAAGGCAATTTGTGGCGTGAGCTTTGGGAAACAGCCAAACCCGTGCCTGCAGTTAGACAAGCACCCCTCTACGATGAGGATTTGGCTGTGGAAGGTATCCTGAATTATCTAGAGGATATTTTACCATCTGAGCTTTTTGAACAGCTGTTTGTTTCTTTGGTTGGTTTAGGGCTTGTCATTGCTGAATCTTTATTGTCCCATCATAGCAACTTCTCTAAGTTTTTCTATGAATGCAAGGACTATGTCGTTGCCTCTTTTCAAGGTGGCCTATGGAGTGAAAAAGTTAACGATATTTGTGAGGTCTATGAAACAGTGGAGGCAATGTTAGTGAATCCAGAAGAAGTGCTGAAAATGTTTAAGCAGCCGGAAACAGAGACAGGTGAGATTTCGGGCGAGACTAAACGCCGTTTTAAGAGACTCAGTCTCAAATTTGGCAGTAACAGTAAAAGCTCAAAAAAATCGACAACAGATTCAAAGAATGGGCAACCGTTTTCAACTTTCTTTGACAGAAAGTCATCTTTATTTTCAAAGAAGCCTCCAAAGCCGGAAATCCCCACTCCGGCTGAAAAATCTCCTTGTCCAGACGAAAACGAATGGACCCTTGTTTAG 2052 41.76 MEEVSFVSKARTAFHSAAAKAERVLTDFKSDRGDSDKQSPKDLLNRAEDEYQKKNNNKKCDTESKHSSWTHVGTKQDWQDRFKNIKLGRKIVEDTEKSEDSAMAVPFYDENLYLLNMKNDLEAKVSEVIPSVESFIAASGKSVPPIYVLKQLAIAVEAGKKYKSMKDLLASSGDSSPARERSSLSLAAMKSLLLRDKEERFSTEFSKDDRVNLLIQSLFDADGNFLERNFGSGIEDITFTSLHKDIHGSPPQSLIVKISEVMGSFKAMRKMALFWCKAVTEMRRLWSEGQYIPCIPKDDIPDLHSCLLYQQFQVINCCLSRKRRRDIATESLDYAISKASSDMELAVSQAIDPVRPILYARISTGELILRLGAAQPFNNLNMLETGEPVYSPITQEEPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWISPPDWTENEQSSDAKDDTPSGDLRGQLSSRMQKEGNLWRELWETAKPVPAVRQAPLYDEDLAVEGILNYLEDILPSELFEQLFVSLVGLGLVIAESLLSHHSNFSKFFYECKDYVVASFQGGLWSEKVNDICEVYETVEAMLVNPEEVLKMFKQPETETGEISGETKRRFKRLSLKFGSNSKSSKKSTTDSKNGQPFSTFFDRKSSLFSKKPPKPEIPTPAEKSPCPDENEWTLV 683
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27827283 27834830 - Bpe012698.1 Bpe03g00786 101291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00786 683 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 4 672 - -
Bpe03g00786 683 MobiDBLite consensus disorder prediction 49 73 - -
Bpe03g00786 683 MobiDBLite consensus disorder prediction 625 683 - -
Bpe03g00786 683 MobiDBLite consensus disorder prediction 625 653 - -
Bpe03g00786 683 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 4 672 IPR045700 GO:0005096|GO:0043547
Bpe03g00786 683 Pfam Rab3 GTPase-activating protein catalytic subunit 370 519 IPR026147 -
Bpe03g00786 683 MobiDBLite consensus disorder prediction 453 474 - -
Bpe03g00786 683 Coils Coil 44 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00786 K18270 RAB3GAP1; Rab3 GTPase-activating protein catalytic subunit - csv:101202869 869.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00786 Bpe-Chr3:27827283 Bpe11g00713 Bpe-Chr11:5499042 7.91E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g534 . . . . . . Bma10g00556 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1155 Cone15ag1172 . . . . Blo07g00898 . Bda05g00713 . . Bpe03g00786 . . . . . . . . . Cpe14g00745 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003785 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 7 5 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00786 Bpe_Chr03 FPKM 2.414219 2.464123 3.551173 3.488504 8.706769 8.469367 8.811132 2.083773 1.904639 1.938201