Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00787 AATGAAAACTTCATAAACCTTTGTCTCAGCGTGGGAATTTCTTACTATGACTCTAGTATTCGCCAACTTCATGTGCTGGAAGTTTGGGAAGACGGTAGCACAGATTTCCCCTTGATTGATATGGTAAAATATCAAGCTAAGCCCCTGATAATTTACACAAGCACTAAATCTGAAGAATCCTTTTTATCTGCTTTACAGCGTAGTGATGGCACAAGTGAGGCTCCACAAGTGAAATTGGTCAAAAGTTCAATATTTAGCTATGAGCAGGCCTGGCACAGATTGATATACCTTAGAGTGACAGGAATGGATGATGGGTTAAACATCAAGGAGCGAATATGCTACTTAAGTTCAATGATGGACATGGGAAGTGATGTTGAAGTTCGTGCAAGTGGTGGTCTTCTTGCCATATTAGAGAATGAACGGATAATAGATACTCTTGAGCAAAAGGAACATGGAGCTTCATCAATTACAATCGATTCTGTCATAGAAATTTCATTAAATACGTTTCTTAAACTTGATGCTGCTGCACTAGAAGCATTGCAGATTTTCCAAACAGACAAACATCCGAGCCATATGGGCATTGGCAGAGCCAAAGAAGGGTGTGTTTTAATCCAGAATTTGGTAAGAATGATTACTCTCTCTAGAAACTGGTTTTTGAGACCAATTCTCGACCTTGACAATTTGAACCGACGTCTCAATGTTATATCATTCTTTTATGCGACTGAAGAATTGATGTTTTCTTTACGGGAGACTCTAAAGTTGGTAAAGGATGTTCCACATATACTCAAGAAATTGAACTCTCCAAGCTTCATGTGTACGCACAATGATTGGACAGCATTTGTAAAGAGCATCAGCTCACTCTTATATTTGAACAAGATATTTGAAGTAGGGATTTCGGAGAATCTTAGGGAGCTAGCAAAGTACTTAGATTTGGACATAATTGAGAAGGCTAATTCATGCTTTACCTCAGAGTTGGCTTATGTATACGAATTGATAATTGGCGTACTTGATGTTGGCAGAACAAAAGAGAAGGGATATGAAACACTTGTCAAGGAGGGTTTTTGTGATGAGTTGGATGAACTCAGGCAAATTTATGAAGAATTGCCTACATTTCTAGCAGAGGTTACATTAATTGAAGTTGAGAGACATCCTCAGCTGTACAAAGATAAACTTTTCCCGAATATTATATATATACATCAAATAGGATACTTGATGTGCATTTTTGAGGAAAAGCTTGATGAAACGACATTGGAGACACTAAAAGATTTTGAATTTGCTTTTGGTGATGTTGATGGAGATATGAGAAGATTTTTTTATCGTACACCAAAGTCACGTGAGTTGGATAATCTGCTTGGAGATATTTATCATAAAATTCTAGACATGGAGAGGACAATTATTAGAGACTTGGTGTCGCACATACTACTCTTCTCAGTGCATCTTCTTACTGCCGTCAGTTTTGCAGCTGAACTTGATTGCTTTTTGTCTTTGGCGCTTGTTGCTCGTCAAAGCAACTATGTAAGGCCTGTTTTGACTGCAGATAACTTGCTTGACATAAAAAATGGAAGACATGTTTTGCAGGAAATGACAGTGGACACTTTTATTCCTAATGACACAAAAATTTCAGATGATGGAAGAGTTAACATCATCACGGGTCCAAACTACTCCGGGAAAAGTGTATACATAAAGCAGGTAGCTTTAATTGTTTTCTTGTCTCACATTGGGAGTTTTGTACCAGCAGATGCTGCAACTGTGGGTTTGACCGACAGAATATTTTGTGCAATGGGAAGCAAGCTTATGACGGTAGAACAGTCAACCTTTATGATCGATCTACATCAAGTAGGGATGATGTTAAGACAGGCAACTTCTCAATCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACACTAACTGAAGATGGTATTGGCCTGCTTGGTGGAACCATCAATCACTTTGCTACCTGTAATGAACCTCCAAAGGTGCTGGTGTGCACACATTTGACTGAGTTACTTGATGAGAGTTACTTATCAACGTCCGAGACAATCAAATTTTACACCATGAGCATACTAAGGCCTGACCGACATTCTACAGAATCCGAAGACATAGTATTTTTGTATCGGTATTTTATTTTTGGTTTCTTAATAACAATTACATTCCATTGCTCTTATATAGGTGTTCCCGAGGAAGTTATCAGGAGAGCAGCATTTGTCTTGGATGCTATTCAGAACAATAAGCATGTTGAGCGACAATTTAATGAAAAAATCTCAGCCCAAGATAAGCTATATGAGAAATCAGTGGATAAGATGTTGGCGTTTGACATTTACAATGGAGATCTCACCCTTTTCTTTCAGGATGTATTTCCTTCTTAA 2367 38.11 NENFINLCLSVGISYYDSSIRQLHVLEVWEDGSTDFPLIDMVKYQAKPLIIYTSTKSEESFLSALQRSDGTSEAPQVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLNIKERICYLSSMMDMGSDVEVRASGGLLAILENERIIDTLEQKEHGASSITIDSVIEISLNTFLKLDAAALEALQIFQTDKHPSHMGIGRAKEGCVLIQNLVRMITLSRNWFLRPILDLDNLNRRLNVISFFYATEELMFSLRETLKLVKDVPHILKKLNSPSFMCTHNDWTAFVKSISSLLYLNKIFEVGISENLRELAKYLDLDIIEKANSCFTSELAYVYELIIGVLDVGRTKEKGYETLVKEGFCDELDELRQIYEELPTFLAEVTLIEVERHPQLYKDKLFPNIIYIHQIGYLMCIFEEKLDETTLETLKDFEFAFGDVDGDMRRFFYRTPKSRELDNLLGDIYHKILDMERTIIRDLVSHILLFSVHLLTAVSFAAELDCFLSLALVARQSNYVRPVLTADNLLDIKNGRHVLQEMTVDTFIPNDTKISDDGRVNIITGPNYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKLMTVEQSTFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINHFATCNEPPKVLVCTHLTELLDESYLSTSETIKFYTMSILRPDRHSTESEDIVFLYRYFIFGFLITITFHCSYIGVPEEVIRRAAFVLDAIQNNKHVERQFNEKISAQDKLYEKSVDKMLAFDIYNGDLTLFFQDVFPS 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27842371 27851944 + Bpe012699.1 Bpe03g00787 101292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00787 788 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 505 674 IPR027417 -
Bpe03g00787 788 Pfam MutS domain V 548 738 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bpe03g00787 788 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 10 767 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bpe03g00787 788 ProSitePatterns DNA mismatch repair proteins mutS family signature. 624 640 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bpe03g00787 788 PANTHER MUTS PROTEIN HOMOLOG 5 10 767 - -
Bpe03g00787 788 SUPERFAMILY DNA repair protein MutS, domain III 173 504 IPR036187 -
Bpe03g00787 788 CDD ABC_MSH5_euk 517 707 - -
Bpe03g00787 788 SMART mutATP5 544 738 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bpe03g00787 788 Gene3D - 170 389 - -
Bpe03g00787 788 Gene3D - 505 774 IPR027417 -
Bpe03g00787 788 SMART DNAend 198 529 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bpe03g00787 788 PIRSF MSH2 5 767 IPR011184 GO:0005524|GO:0006298|GO:0030983
Bpe03g00787 788 Pfam MutS domain III 215 497 IPR007696 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00787 K08741 MSH5; DNA mismatch repair protein MSH5 - vvi:100252044 1192.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00787 Bpe-Chr3:27842371 Bpe07g00731 Bpe-Chr7:13845882 8.12E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g533 . . . . . . Bma10g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1154 . . . . . Blo07g00899 . Bda05g00714 . . Bpe03g00787 . . . . . . . . . Cpe14g00746 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004808 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00787 Bpe_Chr03 FPKM 201.222351 181.273544 131.989136 127.538208 217.784317 281.709167 229.719925 88.082077 107.025627 84.702019