Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00789 ATGGTTCAGATCGTGAAGAGGAAGAAGAAGGGAAGGCCATCTAAGGCAGATCTGGCACGCCGGTTGAGCTGCTCTCCGGCTACTGAACCGGTTGTCCGACGAAGTCACCGGCAGAGAAATGTGAGGTACAACATTGACTACGATGACTATCTGGACGACGATTACGATGACGAGGAAGAGGACGAGAGACTGCAGAAGAAGCTCAAGCTCAAGCTCAAGCTGGTGGTGAAGCTGAACCAGGGCGGAGAAGGAGCTGAGCCGGAGCTAAACAAAGCTCAGTTGCGTGGTGCGCACGCGCTGGACGACGCTGAGTCTCCGTCGGAGGAGGATGAGTCGGAAAGGAAGCCGTTGAAGAAGAGGAGGATTGGCCGTGTTAATGAGGACGAAGAAGAAGACGACGATGAAAATCGCGCGGACGCTGAGGATGAGGATGAAGATATCCTAGGGGTAAGACGACGAACAAAAGTGGGCTCAAAAGGGTCCGAATCTGTTTCAGGGACTCCACCTCATACTCAATCTGGGATACCGCTTCCTGATAAGAAAACCCTGGAGTTGATTCTCGACAAACTTCAGAAGAAAGACATTTATGGTGTGTACGCCGAACCAGTTGATCCAGAAGAGCTCCCTGATTATCACGATGTAATCGAACATCCAATGGACTTTGCTACGGTGAGGAAGAAATTGGCTAGTGGAGCCTATTCAACTTTGGAACATTTTGCGACTGATGTATTCCTTATTTGTTCAAATGCTATGCTATATAATGCACCAGAGACCATATACTATAAACAGGCTCATACCATACAAGAGCTTGCCAAGAAGAAATTTGAAAGATTGAGAGTTGATTATGAATCCTCTGAAAAAGAGCTCAAGCTAGAGCAGAAAACAAAATCCAATTGCTTAGTTAAGAAACAGATAAAGAAGCTGCCAGGCCGGATCTCACAGGAACCAATGGGATCAGATTTTTCCTCAGGTGCAACTCTTGCCACTGCTGGAGATATTCAGAACTGCTCCTTTCCGGCCCAAGGTGGTGGTTATGAGAAAAATACCAATATTGATGGGCATGTTGAAGGGAATTCTTCTTTATTTGAGAATAATTTGGAGAAAGCTGAAGAATTATTCTCAGGGAAGAGTTTCTCATCAAGATTAGGGAGGAAGGCAGTGCTGCTTGATGAAAACCGTCGAGCAACATATGATATTTCTAATCAGCCAGAAAGCAGATCAGAATCAATATTAACTACCTTTGAAGGAGAAATGAAGCAACTTGTTGCAGTTGGCCTTCATGCAGAATATTCATATGCCAGGAGCCTGGCTCGCTTTGCTGCGACTCTTGGGCCAGTCGCTTGGAAAGTTGCCTCCAAGAGGATTGAGAAGGCCCTTCCTGCAGGTTGTAAATTTGGCTTAGGTTGGGTTGGAGAATATGAGCCACTCCCAACTCCAGTACTTCTATTTGAAAATCATAACCAGAAGGAATCTGTTCTATTTACTCCTGGTCTATTTACTCCTGCGGGTTCCGCTGCTGAATTGAGAAAGAATGACATATTGTTGAAGATTCCTTTTCCTACCAAGGAAAATTGTACCAATGGGCCTGTTTCCGAGGTGAAACAATCTTTGTTGGATCCTGTCAGGCGGGATATTTCAGATGGAAAACCATCGTTGTTTGGCTCTGGCGCGATCAAACACAGTTTTCCTTTCAATTCTACGTATCAGCAGCAAAACCTGCAACACCAGCAACCCAACAATTTTACCAAGCCAAGCAAGATGAAAAATCAGTTTGAATTAAACTTGTTGCCTTCCCCCAATCAGAATCATGCTGAGCCTGTATCAGAAAAGCAATCTAATTCGCAATCTATTGCTTCCAGGTCCAAAGACTCGGCCCCTGTTAAAATGAGTCTTCTGCCTTCTGGATCTTTTAAACTGCCAGATTCTAATGGAGTTGTGGCCGGAGGACTACCCAATGGAAAAGTTGTGACTGATTGCTTAAATAGTCATCCTGTTATTGTTTCTTCTGATGGTCTTCCTAATCAAATAGTTAGAGCGGCAGCATACTCCTCCCATGGACAAGAACAAGGTCTCACTGACCCAGTTCAGTTAATGAAATCATTGAGTGAAAAGGCTCAAAGGCAACAGAAATACATCAGTCAAGCTCTGATTGAAGCTCCACTGGTCACGACAGTAGAGTCCAATTCCACAAGGAAAATCGAATCCAACAATGCTTCCGTGGCAGCTGCCCGGGCATGGATGTCTGTTGGAGCTGGAGGTTTTAAAAAAATTGTCGAAAATTCTAGCCTGCCAAATAATCATATATCAGCAGACTCATTATACAACCCAGCGAGGGACTTCAATGCTCAAATCACTAGATTTCATGGGGAGCCTCCTTGTGCTGGGGGGAACAAATTTCATTCTGAGAAGAACGACGGAAACCCGTTGCAGGCATGTTTACCTCAGTCTGTTCGTAAGGGTACGGAAGCACAACTCCAAAGCCAACCTAAAGTTTTTCCCCAGTTAGCTCAAGCCGACTTGTCTAGGTTTCAAGTGCATCCCCATTGGCAAGGTCTCGGCCAACTTGCTCAGCCGAGGCTGAAGCAAGAAATGCTTCCCCCAGACTTGAACATTGGTTTCCAGAGTCCAACTTCTCCAGTGAGACATTCCTCTGGCGTCCAAGTGGACTCACAGCAGCCCGACCTGGCTTTGCAACTTTGA 2700 45.63 MVQIVKRKKKGRPSKADLARRLSCSPATEPVVRRSHRQRNVRYNIDYDDYLDDDYDDEEEDERLQKKLKLKLKLVVKLNQGGEGAEPELNKAQLRGAHALDDAESPSEEDESERKPLKKRRIGRVNEDEEEDDDENRADAEDEDEDILGVRRRTKVGSKGSESVSGTPPHTQSGIPLPDKKTLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLASGAYSTLEHFATDVFLICSNAMLYNAPETIYYKQAHTIQELAKKKFERLRVDYESSEKELKLEQKTKSNCLVKKQIKKLPGRISQEPMGSDFSSGATLATAGDIQNCSFPAQGGGYEKNTNIDGHVEGNSSLFENNLEKAEELFSGKSFSSRLGRKAVLLDENRRATYDISNQPESRSESILTTFEGEMKQLVAVGLHAEYSYARSLARFAATLGPVAWKVASKRIEKALPAGCKFGLGWVGEYEPLPTPVLLFENHNQKESVLFTPGLFTPAGSAAELRKNDILLKIPFPTKENCTNGPVSEVKQSLLDPVRRDISDGKPSLFGSGAIKHSFPFNSTYQQQNLQHQQPNNFTKPSKMKNQFELNLLPSPNQNHAEPVSEKQSNSQSIASRSKDSAPVKMSLLPSGSFKLPDSNGVVAGGLPNGKVVTDCLNSHPVIVSSDGLPNQIVRAAAYSSHGQEQGLTDPVQLMKSLSEKAQRQQKYISQALIEAPLVTTVESNSTRKIESNNASVAAARAWMSVGAGGFKKIVENSSLPNNHISADSLYNPARDFNAQITRFHGEPPCAGGNKFHSEKNDGNPLQACLPQSVRKGTEAQLQSQPKVFPQLAQADLSRFQVHPHWQGLGQLAQPRLKQEMLPPDLNIGFQSPTSPVRHSSGVQVDSQQPDLALQL 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27858339 27863105 + Bpe012701.1 Bpe03g00789 101294

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00789 899 MobiDBLite consensus disorder prediction 32 48 - -
Bpe03g00789 899 SMART bromo_6 172 280 IPR001487 GO:0005515
Bpe03g00789 899 MobiDBLite consensus disorder prediction 1 15 - -
Bpe03g00789 899 MobiDBLite consensus disorder prediction 871 899 - -
Bpe03g00789 899 ProSitePatterns Bromodomain signature. 197 253 IPR018359 -
Bpe03g00789 899 SUPERFAMILY Bromodomain 165 279 IPR036427 GO:0005515
Bpe03g00789 899 MobiDBLite consensus disorder prediction 99 127 - -
Bpe03g00789 899 MobiDBLite consensus disorder prediction 144 158 - -
Bpe03g00789 899 MobiDBLite consensus disorder prediction 596 629 - -
Bpe03g00789 899 Pfam Bromodomain 185 265 IPR001487 GO:0005515
Bpe03g00789 899 PRINTS Bromodomain signature 224 242 IPR001487 GO:0005515
Bpe03g00789 899 PRINTS Bromodomain signature 242 261 IPR001487 GO:0005515
Bpe03g00789 899 PRINTS Bromodomain signature 208 224 IPR001487 GO:0005515
Bpe03g00789 899 MobiDBLite consensus disorder prediction 99 179 - -
Bpe03g00789 899 CDD Bromodomain 179 275 - -
Bpe03g00789 899 MobiDBLite consensus disorder prediction 866 899 - -
Bpe03g00789 899 MobiDBLite consensus disorder prediction 128 143 - -
Bpe03g00789 899 ProSiteProfiles Bromodomain profile. 191 261 IPR001487 GO:0005515
Bpe03g00789 899 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 899 - -
Bpe03g00789 899 Coils Coil 268 295 - -
Bpe03g00789 899 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 899 - -
Bpe03g00789 899 MobiDBLite consensus disorder prediction 596 623 - -
Bpe03g00789 899 Gene3D - 150 299 IPR036427 GO:0005515
Bpe03g00789 899 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00789 K22184 BRD9; bromodomain-containing protein 9 - qsu:112021064 926.776
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00789 Bpe09g00169 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00424 Bpe-Chr3:22622300 Bpe03g00789 Bpe-Chr3:27858339 3.92E-09 dispersed
Bpe03g00789 Bpe-Chr3:27858339 Bpe12g00149 Bpe-Chr12:1086321 1.38E-84 dispersed
Bpe03g00789 Bpe-Chr3:27858339 Bpe09g00169 Bpe-Chr9:1164103 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00789 Bpe_Chr03 FPKM 21.579403 19.020529 26.286646 21.564508 16.858362 18.628696 15.958627 22.773687 21.155096 24.023243