Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00795 ATGATGCAGCAGCCAGGTCCCGGTATGGTTCCATCGTCACAGATGCCTCCTATGTCGTCCGATCACTTTGCTCAACAGTACCAACAACACCAGCAGTGGATGATGAATCAGCCGCAACTGCAAACCCCTCCCCAGCCGATTCCGCCTCCAGCTGGGTGGACCCCGCAGGCTGTAGCTCCGCCCATGCAAGCGCAGGGCCACCAGTACCCAGGGGACGCTAACGCTGGATCTAGCGAGGTTAGATCGCTCTGGATCGGAGACTTGCAACAGTGGATGGATGAAAACTATATCATTAACTGCTTCTCTCACACTGGCGAGGTTGTTTCTGTCAAGGTGATTCGTAATAGGATGACAGGCATGCCTGAGGGATATGGTTTTGTTGAGTTTGTAAGTCATGCTGCTGCTGAGAAAGTTTTACAAAATTACAATGGCTCACTAATGCCGAATAGTGAACAGAATTTTCGATTGAATTGGGCTACCCTTGGTGCTGGCGAGAAACGACAAGATGACGGTCCTGACTTTACAATTTTTGTAGGAGATTTGGCAGCTGATGTTAATGATTACACACTTCAAGAAACATTTAGAGCAGTGTACCATTCTGTGAAAGGTGCAAAAGTTGTCACTGATAGAACCACAGGACGTTCTAAAGGTTATGGTTTTGTTAGGTTTAGTGATGAAAATGAACAAATGCGTGCCATGACGGAAATGAATGGTATCTATTGTTCTTCGAGACCCATGCGTGTTGGACCTGCTGCTACCAAGAAATCTGTTGGAGGATCACAATACCAGAATGGTATGTTGCATTCAGGTTTTGCCCTGTTACTTTACTGTTATTATGTGAAAGTTATTTTTTGGATAATTGCTTTGAGTTACCAGAACACTCCAGGAAATCCTGGGGAAAATGATCCAAATAATACAACTGTGAGTGTTCTATTTTGTCCTTTATATTTAATTTGTTTGTGGATATGTCTCTTACAATGTGGAGTGCAGATATTTGTTGGGGGATTGGACTCCAGTGTTACAGATGATGTGTTGAGACAAGTTTTTAGCCAATTTGGGGAGCTGGTTCATGTGAAAATACCCTTGGGAAAACGGTGTGGCTTTGTTCAGTTTGCTAACAGAATGAGTGCGGAGCAAGCATTATCAATGTTGAATGGAACTCAACTAGGTGGACAAAGTATTCGTCTTTCATGGGGCCGGAGTCCTTCCAACAAGCAACAGGAAGATCAGTCTCAGTGGAATGTTAGTGGGTATTATGGGTATGGACAAGGATACGACACGTATGGATATACTCAAAATCCCCAAGAGGCTCCTAGTATGTATTATGGAGGGTACCCTGGCTATGGTAATTATCAGCAGCCAGGTTCTTATCAACAGCCACATCAGGTAAATGCTCCGATGTGTTTTAGCTAA 1413 44.3 MMQQPGPGMVPSSQMPPMSSDHFAQQYQQHQQWMMNQPQLQTPPQPIPPPAGWTPQAVAPPMQAQGHQYPGDANAGSSEVRSLWIGDLQQWMDENYIINCFSHTGEVVSVKVIRNRMTGMPEGYGFVEFVSHAAAEKVLQNYNGSLMPNSEQNFRLNWATLGAGEKRQDDGPDFTIFVGDLAADVNDYTLQETFRAVYHSVKGAKVVTDRTTGRSKGYGFVRFSDENEQMRAMTEMNGIYCSSRPMRVGPAATKKSVGGSQYQNGMLHSGFALLLYCYYVKVIFWIIALSYQNTPGNPGENDPNNTTVSVLFCPLYLICLWICLLQCGVQIFVGGLDSSVTDDVLRQVFSQFGELVHVKIPLGKRCGFVQFANRMSAEQALSMLNGTQLGGQSIRLSWGRSPSNKQQEDQSQWNVSGYYGYGQGYDTYGYTQNPQEAPSMYYGGYPGYGNYQQPGSYQQPHQVNAPMCFS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27908511 27912424 - Bpe012707.2 Bpe03g00795 101300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00795 470 MobiDBLite consensus disorder prediction 1 40 - -
Bpe03g00795 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 329 401 IPR000504 GO:0003723
Bpe03g00795 470 Gene3D - 161 267 IPR012677 -
Bpe03g00795 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 246 IPR000504 GO:0003723
Bpe03g00795 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 331 395 IPR000504 GO:0003723
Bpe03g00795 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 151 IPR000504 GO:0003723
Bpe03g00795 470 SUPERFAMILY RNA-binding domain, RBD 330 429 IPR035979 GO:0003676
Bpe03g00795 470 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 330 454 - -
Bpe03g00795 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 161 IPR000504 GO:0003723
Bpe03g00795 470 MobiDBLite consensus disorder prediction 1 75 - -
Bpe03g00795 470 MobiDBLite consensus disorder prediction 41 56 - -
Bpe03g00795 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 253 IPR000504 GO:0003723
Bpe03g00795 470 SUPERFAMILY RNA-binding domain, RBD 65 160 IPR035979 GO:0003676
Bpe03g00795 470 SMART rrm1_1 175 249 IPR000504 GO:0003723
Bpe03g00795 470 SMART rrm1_1 330 397 IPR000504 GO:0003723
Bpe03g00795 470 SMART rrm1_1 82 157 IPR000504 GO:0003723
Bpe03g00795 470 Gene3D - 324 434 IPR012677 -
Bpe03g00795 470 CDD RRM1_SECp43_like 82 160 - -
Bpe03g00795 470 CDD RRM2_SECp43_like 173 252 - -
Bpe03g00795 470 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 24 310 - -
Bpe03g00795 470 Gene3D - 80 160 IPR012677 -
Bpe03g00795 470 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 330 454 - -
Bpe03g00795 470 SUPERFAMILY RNA-binding domain, RBD 163 262 IPR035979 GO:0003676
Bpe03g00795 470 CDD RRM3_NGR1_NAM8_like 331 399 - -
Bpe03g00795 470 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 24 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00795 - - - jre:108984045 550.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00795 Bpe-Chr3:27908511 Bpe04g00192 Bpe-Chr4:1262758 2.44E-115 dispersed
Bpe11g00546 Bpe-Chr11:4185893 Bpe03g00795 Bpe-Chr3:27908511 2.07E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00909 Blo10g00824 Bda05g00725 Bda12g00903 . Bpe03g00795 . Bma14g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00795 Bpe_Chr03 FPKM 0.50366 0.0 0.0 0.0 2.104035 2.272629 2.544735 0.0 0.0 0.0