Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00800 ATGATTTCGACCGGCAAGCTCAAGTCCGTTGATTTCTACAGGAAAATTCCTAGGGATTTGACTGAGGCATCGTTATCAGGGGCAGGATTATCCATAGTAGCAGCTCTGTGTATGACATTTTTATTTGGAATGGAATTAAATAATTATTTGACCACAAGCACCTCTACATCCCTTATTGTTGACAAGAGTAGCGACGGGGATTTCTTACGCATTGACTTTAATATCAGTTTTCCTGCACTCTCATGTGAATTTGCAACGGTTGATGTGAGTGATGTGTTGGGAACAAATAGGTTAAATATTACAAAAACAATCCGAAAGTTTTCCATCGATCCAAACCTAAGGCCCACAGGCTCCGAGTTCCACTCTGGACCAATTTCGCATGCTATTAAGCATGGAGATGATGTCGACGAAGAGCATGGTGAAGGTTCTGTTCCATTGTCGGGAGATAATTTTGATAAATATTCTCACCTGTTTCATATTTTGGTTGTCAATTTTTATGCTCCTTGGTGTCCTTGGAGCAATCGCATGAAACTTTCTTGGGAGAAGGCAGCAAAAACAATTAGAGAGAGATATGATCCAGAGTTAGATGGTCGTATTCTTATGGGGAAGGTAGATTGCACAACAGAAGGAGAATTGTGTAGGAAGCATCACATTCAAGGGTATCCATCTGTTCGCATATTTCGTAAAGGAAGTGATCTTAGGAGCGAACATGGTCACCATGGACATGAATCTTACTACGGAAATCGAGATGCAGAAAGCTTGGTTAAGGCAATGGAAGAATTGGTTGCACCTATTCCAATTGAGTCAAATGCACTAACTTTGGAAGATAAATGGAAAAACACAACGGAAAATTCGACTAGGCCTGCACCGATAGCAGGCGGGTGTAGAGTTGAAGGATATGTCCGCGTAAAGAAAGTGCCCGGAAGTCTTATCATTGCCCCTCGATCAGGAGCCCATTCATTCGATGCATCTCAAATTAATATGTCACATGTCATCTCCCATCTTTCATTTGGTCGGATGATTTCAGCAAAAACATTGAATGATGTTAAACAGTTGGTGCCTTATATTGGTAAAAACCACGAAAGGCTCAACGGTCGCTCATTCATCAATCATCGAAACTTAGGTGAAAACGTGACTATAGAGCATTATCTTCAAGTAGTCAAAACAGAAGTAATGACAACACGATCCGGTAAAGTTCTCGAGGAGTATGAATACACGTCCCATAGCAGTTTGACCCAGAGTTTGCACGTGCCGGTTTCCAAATTCCATTATGAGCTTTCGCCTTTGCAGGTTGTAATAACGGAAAATCAGAAGTCGTTTTCGCATTTTATAACAAATGTTTGTGCAATAATTGGAGGCGTTTTTACGGTTGCAGGAATACTGGATTCAATTCTGCACAATACCATAAGAATCATGAGAAAGGTTGAGCTTGGCAAGAATTTTTGA 1446 40.8 MISTGKLKSVDFYRKIPRDLTEASLSGAGLSIVAALCMTFLFGMELNNYLTTSTSTSLIVDKSSDGDFLRIDFNISFPALSCEFATVDVSDVLGTNRLNITKTIRKFSIDPNLRPTGSEFHSGPISHAIKHGDDVDEEHGEGSVPLSGDNFDKYSHLFHILVVNFYAPWCPWSNRMKLSWEKAAKTIRERYDPELDGRILMGKVDCTTEGELCRKHHIQGYPSVRIFRKGSDLRSEHGHHGHESYYGNRDAESLVKAMEELVAPIPIESNALTLEDKWKNTTENSTRPAPIAGGCRVEGYVRVKKVPGSLIIAPRSGAHSFDASQINMSHVISHLSFGRMISAKTLNDVKQLVPYIGKNHERLNGRSFINHRNLGENVTIEHYLQVVKTEVMTTRSGKVLEEYEYTSHSSLTQSLHVPVSKFHYELSPLQVVITENQKSFSHFITNVCAIIGGVFTVAGILDSILHNTIRIMRKVELGKNF 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27940801 27958812 + Bpe012712.1 Bpe03g00800 101305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00800 481 Gene3D Glutaredoxin 137 288 - -
Bpe03g00800 481 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Bpe03g00800 481 ProSiteProfiles Thioredoxin domain profile. 98 263 IPR013766 -
Bpe03g00800 481 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 481 IPR045888 -
Bpe03g00800 481 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 481 - -
Bpe03g00800 481 SUPERFAMILY Thioredoxin-like 143 261 IPR036249 -
Bpe03g00800 481 Pfam Thioredoxin 146 256 IPR013766 -
Bpe03g00800 481 Pfam Endoplasmic reticulum vesicle transporter 287 462 IPR012936 -
Bpe03g00800 481 CDD PDI_a_family 144 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00800 - - - zju:107432289 778.474
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00800 Bpe09g00185 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00800 Bpe-Chr3:27940801 Bpe12g00318 Bpe-Chr12:6490258 1.30E-16 dispersed
Bpe03g00800 Bpe-Chr3:27940801 Bpe09g00185 Bpe-Chr9:1291520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g461 . . . . Bpe09g00185 . Bma10g00538 Bma13g01037 . . . Cma09g00934 . Car09g00847 Sed07g2660 Cpe06g00751 . Bhi09g01932 Tan01g4519 Cmetu04g0238 . Hepe01g1301 Mch11g1163 . . . . . . . . . . Cone14ag1127 Cone15ag1146 Lsi04g01231 . . . Blo07g00917 Blo10g00815 Bda05g00731 Bda12g00898 . Bpe03g00800 . . . . Cmo09g00931 . . . . . . . . . . . . . Cla05g01521 Cam05g1634 Cec05g1637 Cco05g1670 Clacu05g1623 Cmu05g1521 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005210 2 1 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00800 Bpe_Chr03 FPKM 2.410781 2.713753 7.347669 8.493736 7.577946 6.963458 7.267712 21.041153 23.547117 20.850599