Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00805 ATGCCATCCATTCCCATACCCAGATTGCTTTCACCATCCTCACCTAGCAGCGGTTTTCATGCCTTGTTCTTTTCATGTTTTGTACAATGCCGAATGCCAAAAAGGTTGTTTAACTCTCCGTGTCATTTAACACTCAGTAACAGGATAAAAGCAATCAATAAAGTAGTTTTGGATGATAAATCCAGTGTTATTAGGTTTCCATCTGGTCAAAATGAAAGAGAGGAACTCCATGCCGATTTGTATAGTTGTTTAATTCGTGACTGTTGCAAAGTTGCTGATGTTGATGGAGCCTTAGTTTTTCTTGCACAAGTGGAAGCATTAGGTTACCGAGCTAGATTAACATCGTATACTTCTCTAATTGAAGTACTTGGAAGTGTAGGTAGGACTCTGGAAGCGGATGCTTTATTTCAAGAAATGATTAATTTTGGGTTTAAACCCGAAGTGACAGTCTTCAATTTTTTACTCAGAGGGTTTTTGAAGAAAGGCCAGTTAGATCTTGCATATAAAGCGTTGGCTGTAATGAGTGATTTAGGTGTTCAGAGAAATCAAGAAACTTATGAGATCCTCTTATATTGTTATGCTAGTGCCGGGCGGTTGGAAAATACTGGGGGTATTATCGATGAAATGAGAAAATTGGGATTTTATCTGAATTCATTTGTGTATAGTAAAGTTATTGTCTTGTATAGAGACAATGGCATGTGGAAGAAGGCTGTTGGCATCATTGAAGAGTTTAAAGAAAAGGGTATTCCACTTGATAAGCATATTTATAACAGCATCATCGTGTTTGAAAAAATGCAACAAGAAGGCATAAACCATGATATAACGACTTGGAATTCTATGATTCGATGGAGTTGTCGGAGTGGGAATCTAACTAAGGCTATTGAATTATTTTCGGCGATGCAAGGATCATGTGAACAGACAATAAAAGTGTTTCAACTAATGGAAGCAGAAGGAATTGAGCCTGTAAGGCCCCCCAAAACAGACAAGACAGCTATATTGAACGATGCCATCCAAATGGTGGAGAAAAATGAGCTTCGCGATGAGAAACAGAGGCTAGAAGGAGAGAAGGAGAAACTGGAGCAACAAATGAAATCTATGAAGACACCGCCCAGCTTCTTGTCTCCTACTGCAATGACAGCAGCATTTGGTGCTCCCGGCCAAGCTCCTGGCAGTAACTTGGTGCCTTTCATCGGCTATCCAGGAGTTGTCATGTGGCAGTTCACGCCACTAACTTCAGTCTACACATCACAGGATCATGTCCTCCGTCCTCCGGTTGCTTGA 1281 40.52 MPSIPIPRLLSPSSPSSGFHALFFSCFVQCRMPKRLFNSPCHLTLSNRIKAINKVVLDDKSSVIRFPSGQNEREELHADLYSCLIRDCCKVADVDGALVFLAQVEALGYRARLTSYTSLIEVLGSVGRTLEADALFQEMINFGFKPEVTVFNFLLRGFLKKGQLDLAYKALAVMSDLGVQRNQETYEILLYCYASAGRLENTGGIIDEMRKLGFYLNSFVYSKVIVLYRDNGMWKKAVGIIEEFKEKGIPLDKHIYNSIIVFEKMQQEGINHDITTWNSMIRWSCRSGNLTKAIELFSAMQGSCEQTIKVFQLMEAEGIEPVRPPKTDKTAILNDAIQMVEKNELRDEKQRLEGEKEKLEQQMKSMKTPPSFLSPTAMTAAFGAPGQAPGSNLVPFIGYPGVVMWQFTPLTSVYTSQDHVLRPPVA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27979792 27996863 - Bpe012715.3 Bpe03g00805 101310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Bpe03g00805 426 Coils Coil 342 369 - -
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Bpe03g00805 426 PANTHER OS06G0710800 PROTEIN 53 301 - -
Bpe03g00805 426 Gene3D Tetratricopeptide repeat domain 78 259 IPR011990 GO:0005515
Bpe03g00805 426 Gene3D Tetratricopeptide repeat domain 260 379 IPR011990 GO:0005515
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Bpe03g00805 426 Pfam PPR repeat family 146 194 IPR002885 -
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Bpe03g00805 426 Pfam PPR repeat 115 144 IPR002885 -
Bpe03g00805 426 Pfam PPR repeat 276 302 IPR002885 -
Bpe03g00805 426 Pfam Pentatricopeptide repeat domain 205 260 IPR002885 -
Bpe03g00805 426 TIGRFAM PPR: pentatricopeptide repeat domain 115 146 IPR002885 -
Bpe03g00805 426 TIGRFAM PPR: pentatricopeptide repeat domain 276 301 IPR002885 -
Bpe03g00805 426 TIGRFAM PPR: pentatricopeptide repeat domain 185 217 IPR002885 -
Bpe03g00805 426 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 303 IPR002885 -
Bpe03g00805 426 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 53 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00805 - - - rcu:8283056 299.286
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00805 Bpe08g01142 CCT
Bpe03g00805 Bpe09g00195 CCT
Bpe03g00805 Bpe09g00195 ECH
Bpe03g00805 Bpe08g01142 ECH
Bpe03g00805 Bpe11g00524 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00805 Bpe-Chr3:27979792 Bpe05g00177 Bpe-Chr5:6702620 2.76E-11 dispersed
Bpe13g00563 Bpe-Chr13:12826572 Bpe03g00805 Bpe-Chr3:27979792 2.18E-09 dispersed
Bpe09g00626 Bpe-Chr9:14925288 Bpe03g00805 Bpe-Chr3:27979792 1.99E-07 transposed
Bpe11g00524 Bpe-Chr11:4073329 Bpe03g00805 Bpe-Chr3:27979792 4.68E-47 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe08g01142 Bpe-Chr8:13277068 2.93E-31 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe08g00333 Bpe-Chr8:1978216 6.07E-34 wgd
Bpe03g00805 Bpe-Chr3:27979792 Bpe09g00195 Bpe-Chr9:1381713 1.27E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g420 . Blo03g01435 Bda07g00338 . Bpe09g00195 Bpe08g01142 . Bma13g01026 Cmo16g00916 . Cma01g01152 Cma09g00924 . Car09g00840 Sed02g1399 Cpe06g00744 Cpe02g00749 Bhi09g01946 Tan01g4506 Cmetu06g0261 . Hepe01g1311 Mch11g1152 . . . . . . . . . . Cone14ag1119 Cone15ag1137 Lsi04g01245 . Chy04g01015 . Blo07g00920 Blo10g00804 Bda05g00737 Bda12g00887 Bpe11g00524 Bpe03g00805 Bma07g01316 Bma14g00357 . Cmo01g01205 Cmo09g00921 . . . Car16g00564 . . . . . . . . . Cla05g01539 Cam05g1646 Cec05g1652 Cco05g1689 Clacu05g1640 Cmu05g1535 Cre05g1645 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003055 1 11 1 1 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 2 1 0 1 1 11 1 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00805 Bpe_Chr03 FPKM 15.406395 17.24139 9.591048 10.378331 24.553148 27.411661 27.36742 9.512589 10.307332 11.279425