Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00807 ATGGAGGATTTTTCTGCAACAATAGAGGGGAAAGGGGAGAGAGAGAGAGGAGTAAGAACCACATACTGCGTGACTGGAGCCAGTGGGTTTATTGGGTCATGGTTGGTGAAAACTCTTCTTCAAGATGGCTACACGGTTCGTGCCACAGCTCGTGATCCTGCAACTGCTGCAGCAAAGTGTTTGCATCTATCATCACAGTGGAGTGGAACCCAGCGTTTAAGATTATTCAAAGCGGATTTGAATGAAGAAGGAAGCTTTGACGAAGCTGTTAATGGCTTGGGTAAACTATTTTCCAAAATTGTAGAGAATTATGTTCGATCACAGATCATTGACCCTCAAATCAAAGGTGTTCAAAACCTTCTGAAGTCGTGCTTGAAATCTAAATCCATCAAAAGGGTCGTCTTCACATCCTCGATTAGCACTGTCACTGCAAGAGACAACAATGGCGAATGGAGGCCGGCCGTCGACGAGTTTTCTCAAACCCCTGTTTACATACTTTCAAAGATTTTAACTGAGGAAGCTGCATATAAATTTGCTTCTGAAAATGGAATAGACCTTGTTTCGATAATCACGAGCACCGTCTCCGGTCCATTTCTTACGCCTCATCTTCCACTGAGCATTCGGGTCCTCTTGTCTCCTATCACAGGAGAAGGTGAGTTATTAAGGATATTATGTTCAGTGAAAGAGAGAATGGGGTCAATCGGAATGGTTCATACTGAAGATTTATGCAGAGCTCACATTTTTGTAATGGAGCATCCCCATGCCCACGGTCCGTACATTTGTTGTGTCGATAGCTGTACGATCTCAAAGTTGGTCGATCTTCTCGCTCGACAATGGCCGACGTCGGGTCTAAAGAGGTACGAGGAGGAAGAAAGAGGAGTTCCTACAGAGATATCATCTAAGAAACTCAGAGATTTAGGGTTTGAATATAAACATGGAATTGAAGGTGTAATTGGCCAAACAATCACCTTTTGTGTTGCTAATGGCTTTTTATCATCAAGTGTAACATAG 1011 43.22 MEDFSATIEGKGERERGVRTTYCVTGASGFIGSWLVKTLLQDGYTVRATARDPATAAAKCLHLSSQWSGTQRLRLFKADLNEEGSFDEAVNGLGKLFSKIVENYVRSQIIDPQIKGVQNLLKSCLKSKSIKRVVFTSSISTVTARDNNGEWRPAVDEFSQTPVYILSKILTEEAAYKFASENGIDLVSIITSTVSGPFLTPHLPLSIRVLLSPITGEGELLRILCSVKERMGSIGMVHTEDLCRAHIFVMEHPHAHGPYICCVDSCTISKLVDLLARQWPTSGLKRYEEEERGVPTEISSKKLRDLGFEYKHGIEGVIGQTITFCVANGFLSSSVT 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 27997879 28000022 - Bpe012716.1 Bpe03g00807 101312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00807 336 Pfam NAD dependent epimerase/dehydratase family 23 255 IPR001509 -
Bpe03g00807 336 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 21 323 IPR036291 -
Bpe03g00807 336 CDD FR_SDR_e 22 308 - -
Bpe03g00807 336 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 17 322 - -
Bpe03g00807 336 Gene3D - 14 333 - -
Bpe03g00807 336 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 17 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00807 - - - mnt:21404025 384.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00807 Bpe-Chr3:27997879 Bpe05g00102 Bpe-Chr5:1910808 5.62E-65 dispersed
Bpe01g00372 Bpe-Chr1:2343109 Bpe03g00807 Bpe-Chr3:27997879 4.36E-68 wgd
Bpe03g00807 Bpe-Chr3:27997879 Bpe08g00337 Bpe-Chr8:1993110 7.89E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g408 . . . . . . Bma10g00532 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1117 Cone15ag1133 . . . . . . Bda05g00741 . . Bpe03g00807 . . . . . . . . . Cpe14g00711 Cpe01g00793 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010894 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00807 Bpe_Chr03 FPKM 7.139573 7.735099 0.151391 0.560513 0.0 0.0 0.0 0.0 0.0 0.0