Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00808 AAATTAGACCAGAAAGTTGAAAAAGAAATTCAAAACCTGAAAGAAGACGTGAAGAACGCGTTGACAGCTCCAACCCAGAATCCGTCACAGAAACTAAACTTGATCGATTCAATCCAACGGTTAGGAGTTGCAGATCACTTCCAATCAGAAATCCAAGACTTATTGGACCAAGTTAACAAGACTTGTACTGACTGTTTCACTAATGAAAATGACCACAGTCTTCCATCGGATGCTCTTCTCTTTCGACTGCTCAGACAACAGGGTTACAAAGCTTCGACCGCAGATATATTCAAGAAATACACAGACAGTGACGGAAAATTCAAGGAAAGCCTAGCTGAGGACGTGAGAGGACTATTGAGCTTGTATGAAGCAGCATATTTCAGTGTTCACGGAGAAGATATACTCGATAATGCACTTAACTTTGCCACAAAAAAACTAGAAGCCATTGTAGGTAAGTTAAGCTACCCTCTTTCCGAAGAAGTGAAATATGCTCTAAAGCATCCTCTCCGACGAGGCATGCCGAGACTTGAAGCGAGGCACTTCATGTCGATTTACAAGGAAGATCCCTCTCACAGTGATATCCTTCTTACCTTTGCAAAGCTCGATTATAACATATTTCAAAAACTACACCAGGAGGAACTTAAAGAAGTGTCTAGGTGGTGGAAGGATTTAGACTTTCCGAGCGTGCTACCATTTGCAAGAGATAGGATTGCTGAATGTTACTTTTGGGCCTTGATTATAAGCCCCGAGCCTCAATACTCGGTTCTCAGAAGGTTCATGGCCAAAGTCATTCAAATGGCCTCGGTTCTCGATGATATATATGACGTTCACGGCACACCTGAAGAAATCCGACTCCTGACTGACGCAATTGATAGGTGGGATAGTAGCGCTCAAGATCAACTACCTGACTACCTCAAATTTTACTATCAAAAAGTGTTGCGACTTTATGCCGATTTCGAAAGAGAGAACGGTATCGAGAGTGAATCGTTCCGAATGCTCCGTGCAAAAGATGGGATGAAAGGACAAGCAAAGGCCTACTTTGGTGAAGCAAATTGGTTCCACGCAGGCCATATACCCACCATCGATGGGTATTATGAGTTTGCTTTGCCTTCCACTTGCTATCGTTTTTTCTCGGTCACTGCCTTTCTTGGCATGGGAGATGTCATTCCAAATGAGGCTTTTGATTGGATATTTACAAAGCCCAAGATTCTTCGCGGGGCTGAAATCATCGGAAGGCTCATGAACGACGTTGTCTCTCACAAGTTTGAGCAAGTTCGTGGCCACACAGCATCTGCTATGGAATGTTATATCAAACAATATGGAGTTTCGGAGGAGGAGGCATGCACTGCTCTTGAGAAGCGAGTAGATGATGCGTGGAAGGATATAAACGAGTGTTGTTTGAAACCTACTGAGTTCTCGATGACCGTGTTGTCGCCTATTGTTAGTCTTGCTAGGGCTAGCCATATCAACTATAGGGACGAAGATGGATACACGATCATAGACGGAGAAACTAAACGTTACATTACTTCGTTGATCGTAGATCCTGTCACACTTTGA 1557 43.35 KLDQKVEKEIQNLKEDVKNALTAPTQNPSQKLNLIDSIQRLGVADHFQSEIQDLLDQVNKTCTDCFTNENDHSLPSDALLFRLLRQQGYKASTADIFKKYTDSDGKFKESLAEDVRGLLSLYEAAYFSVHGEDILDNALNFATKKLEAIVGKLSYPLSEEVKYALKHPLRRGMPRLEARHFMSIYKEDPSHSDILLTFAKLDYNIFQKLHQEELKEVSRWWKDLDFPSVLPFARDRIAECYFWALIISPEPQYSVLRRFMAKVIQMASVLDDIYDVHGTPEEIRLLTDAIDRWDSSAQDQLPDYLKFYYQKVLRLYADFERENGIESESFRMLRAKDGMKGQAKAYFGEANWFHAGHIPTIDGYYEFALPSTCYRFFSVTAFLGMGDVIPNEAFDWIFTKPKILRGAEIIGRLMNDVVSHKFEQVRGHTASAMECYIKQYGVSEEEACTALEKRVDDAWKDINECCLKPTEFSMTVLSPIVSLARASHINYRDEDGYTIIDGETKRYITSLIVDPVTL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28028211 28030227 + Bpe012717.1 Bpe03g00808 101313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00808 518 SUPERFAMILY Terpenoid synthases 191 516 IPR008949 -
Bpe03g00808 518 Gene3D Farnesyl Diphosphate Synthase 3 506 IPR008949 -
Bpe03g00808 518 CDD Terpene_cyclase_plant_C1 3 515 IPR044814 GO:0010333|GO:0016102
Bpe03g00808 518 PANTHER OS04G0344100 PROTEIN-RELATED 6 503 - -
Bpe03g00808 518 PANTHER TERPENE SYNTHASE 2-RELATED 6 503 - -
Bpe03g00808 518 Coils Coil 3 23 - -
Bpe03g00808 518 Pfam Terpene synthase family, metal binding domain 196 461 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bpe03g00808 518 Gene3D - 26 191 IPR036965 GO:0010333|GO:0016829
Bpe03g00808 518 SFLD Terpene Cyclase Like 1 C Terminal Domain 194 517 IPR034741 -
Bpe03g00808 518 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 4 191 IPR008930 -
Bpe03g00808 518 Pfam Terpene synthase, N-terminal domain 4 165 IPR001906 GO:0010333|GO:0016829
Bpe03g00808 518 SFLD Isoprenoid Synthase Type I 194 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00808 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 zju:107435184 565.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00808 Bpe-Chr3:28028211 Bpe09g00225 Bpe-Chr9:1599008 1.01E-13 dispersed
Bpe08g00799 Bpe-Chr8:9908274 Bpe03g00808 Bpe-Chr3:28028211 0 transposed
Bpe11g00586 Bpe-Chr11:4454565 Bpe03g00808 Bpe-Chr3:28028211 1.63E-142 transposed
Bpe01g00373 Bpe-Chr1:2351200 Bpe03g00808 Bpe-Chr3:28028211 1.36E-75 wgd
Bpe11g00516 Bpe-Chr11:4001010 Bpe03g00808 Bpe-Chr3:28028211 3.36E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g403 . . Bda07g00331 . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0113 . . . . . . Blo07g00921 . Bda05g00743 . . Bpe03g00808 . . . . . . Cma16g00830 . . . . . . . . . . . . . . . . . . Lsi05g00657 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00808 Bpe_Chr03 FPKM 64.051674 65.705544 18.455391 17.649828 28.603167 29.87084 27.993275 5.435148 5.900577 5.68237