Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00813 ATGGCGGACGAGTTTCAAACTAGTGGAAGCTGGTGGGAGTCGTCCAGAAACAGGTTTGAAAGAGGGATATCCCCGCCTTCTTCAGCTCTGAGAAGCTTAGGGAGCTTCGGTTGGCCTCCAGAAATGGCGGATATGAAAGCAAGGTCGTCAATGGAGTCTGTTTCAGTTTCCAGTAGTTCTTCTTTCGCCTACCATGATATCCAGAAGTTTCAAGATTCTGATTCTTCAGCCGTTGATCCAAATTTGCAGATGATGGGTTTATGGCTTTCTTCCCCCACCATAGATTGGAACCAATCCTTACTTCTTGGAGAGAAGTCCGAAATGAGTTTCAGATCGATGCATCAAGAAAATATGAACTCAAATAGTAATTTTCACCAACAAAGTGGGCGAAATCAATGGAGAGACAGACTCTTTTCTGGAGATAATTTATCAGAAAACGAGTTTAAGCCATTAAATCGAGGTTTTTCGTCAGATCAACAGGAGTTTAGCGCTCACGATTACAGTGGAGTTGATACCACAGCGACATGTTTAGGGCTATCTTCGAGTTTTCAAATGGATTCATCAGCTCTGTATGCAAATCCAACTACGATTCTACAAGGTTTCGAAAACCAGAATCAGCAAAATTCAAACTCCATGGAGTTCTCTCATGGAGCAAATTTTCTCAAGAATTCTAACGAATTCAAGCCTTCTTCTTGGTCTTCTTCTAAAGTTCCTCAGTTTTTAAGAGCTTTACCTCCTAAAAACCAGACCCACCATAGCCATTTGCACTTTTCTAACAACGCTCCCCTCTGGAATGCTTCAGAAGCCGCCACTAAAGACACCAAACCAAGCTTTTTTCCTTCCCTGCAAACACAATTCTACTCACAAAACTTCGAGGAAAAGCCTAAGCAGAATATATCTGAAACGCGTGATTCAGGAACTGTAATAAAGAGAAGTGGGAGCCAACAAAATTCCAAAAGGCCAAGAAGTGAAACACCATCGCCTTTGCCAGCTTTCAAGGTGAGAAAAGAAAAGATGGGGGACAGAGTCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACTGCCTCAGTGCTTTCCGAAGCCCTTGACTATATCAAGTTCCTCCACGAACAAGTTAGTGTTTTAAGCACTCCATACATGAAAAGTGGAGCTGCAATGCAACATCAACATAATCATTTTTGTCGTTGGCAGAATTTAGACAAGTCCAATGAGGCAGAAGGGCTGAAGCAAGATCTCAGAAGCCGAGGGCTGTGTTTAGTACCGGTTTCAAGCACATTCCCAGTGACTCACGAAAGCACGGTTGATTTTTGGACGCCAACATTTGGAGGAACATTCAGCTGA 1353 42.94 MADEFQTSGSWWESSRNRFERGISPPSSALRSLGSFGWPPEMADMKARSSMESVSVSSSSSFAYHDIQKFQDSDSSAVDPNLQMMGLWLSSPTIDWNQSLLLGEKSEMSFRSMHQENMNSNSNFHQQSGRNQWRDRLFSGDNLSENEFKPLNRGFSSDQQEFSAHDYSGVDTTATCLGLSSSFQMDSSALYANPTTILQGFENQNQQNSNSMEFSHGANFLKNSNEFKPSSWSSSKVPQFLRALPPKNQTHHSHLHFSNNAPLWNASEAATKDTKPSFFPSLQTQFYSQNFEEKPKQNISETRDSGTVIKRSGSQQNSKRPRSETPSPLPAFKVRKEKMGDRVTALQQLVSPFGKTDTASVLSEALDYIKFLHEQVSVLSTPYMKSGAAMQHQHNHFCRWQNLDKSNEAEGLKQDLRSRGLCLVPVSSTFPVTHESTVDFWTPTFGGTFS 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28109988 28112186 + Bpe012723.1 Bpe03g00813 101318

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00813 450 MobiDBLite consensus disorder prediction 291 324 - -
Bpe03g00813 450 Gene3D - 333 396 IPR036638 GO:0046983
Bpe03g00813 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 333 391 IPR036638 GO:0046983
Bpe03g00813 450 CDD bHLH_AtbHLH_like 329 380 IPR045239 -
Bpe03g00813 450 MobiDBLite consensus disorder prediction 291 330 - -
Bpe03g00813 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Bpe03g00813 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 439 - -
Bpe03g00813 450 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 7 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00813 - - - mesc:110601182 530.406
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00813 Bpe09g00206 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00813 Bpe-Chr3:28109988 Bpe11g01724 Bpe-Chr11:13561454 1.59E-30 dispersed
Bpe04g01702 Bpe-Chr4:22920568 Bpe03g00813 Bpe-Chr3:28109988 1.72E-20 dispersed
Bpe01g00376 Bpe-Chr1:2365323 Bpe03g00813 Bpe-Chr3:28109988 3.63E-75 wgd
Bpe03g00813 Bpe-Chr3:28109988 Bpe08g00339 Bpe-Chr8:2014115 2.92E-65 wgd
Bpe03g00813 Bpe-Chr3:28109988 Bpe09g00206 Bpe-Chr9:1460776 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00813 Bpe_Chr03 FPKM 9.218241 8.086576 9.090984 8.356586 8.516469 8.278201 9.267135 8.518752 7.114731 7.863412