Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00840 ATGGAAACCATGGATGATACATACCCATCTCTGGTAGAAGTAACTCAGGCAGAAGATGTCGAAGAAAATGGCGAAGAAGAAGAAGGTTCGAAATGGTGGAAAACCCATATTTTGGATACAAAGGAGGCTAAGACCCAAATCTTGTTTTCGCTTCCCATGATTCTGACAAATGCGTTTTACTATTTGATTCCTCTGGTCTCCGTCATGTTTGCTGGACATCTCGGCGAGCTTGAACTCGCCGGAGCTACACTTGCTAATTCTTGGTCCACTGTAACTGGCTTTGCTTTCATGATAGGTTCTAGCGGAGCTCTCGAAACGCTCTGTGGACAAGCGTTTGGTGCAAAATGTTACAGAAATCTGGGGTTATATCTTCAGGCCTCTTGTCTCATAACCTTCTTTTTCTCTGTCCTCATTTCCATTTTTTGGTTCTTCACTGAGCCCGTGCTGATTTTACTTCATCAAGAACTGGATATTGCTAAGAAAGCCGGAGTATACATGAAGTTTTTGATTCCGGGCTTGGTAGCTTACGGATTCTTACAAAACATCGTAAGATTTCTTCAAACACAATCCGAGGTTGTGCCACTGCTTATCTTCTCAGCTCTTCCAATGGCCGTTCATATCCCAATTGCATATTTGTTTGTTAATGTTTCTTCTTTGGGATTTGAGGGAGCTGCAATGGCTGTTTCTGTTACTATATGGATTGCGTTTCTGGTTTTGGCAATTTATATGCTTAAATCAAAGAAGTTTGAGAATACTTGGGATGGATTTTCGATGGATTCGTTTGGTTACGTTTTCACGAACCTCAAACTTGCTATTCCGTCTGCAGCCATGGTTTGTTTGGAGTACTGGGCCTTCGAGATTCTTGTGCTCTTAGCTGGATTGATGCCAAACCCGGAAACAACTACGTCGCTAATTGCAATGTGTGTAAACACTGAAGCCTTTGCTTACATGAGCACCTTCGGCCTCAGTGCTGCTGCAAGCACGAGAGTGTCAAATGAGCTGGGAGCAGGCAATCTCAAGCAAGCGAAGGCGGCCATGGCAGTCACTCTCAAGCTCTCCCTCCTCCTCGCGTTTGTCATTGTTCTTGCTCTTGGCTTTGGTCATAACATCTGGGCCTCCCTCTTCAGTGATAGTCATGTCATAATCAAAGCTTTCGCTTCCATTACACCGTTTCTTGTTACCTCGATCATATTCGATTCGATTCAAGGGATTTTGTCAGGGGCGGCCAGAGGTTGTGGGTGGCAACACTTTGTTGTGTGCATAAACTTGGCGACGTTTTATTTCGTTGGGATGACAGTTGCATCCGTGCTCGGATTCAAGTTTAAACTACATGCTAAGGGTTTGTGGATAGGCTTAATTACGGGTCTCTTTTGTCAAACTATCTCGCTCGTGTTCGTAATGTGGTATGGGAAATGGAAGAAGATCATTCTGTTTGAGACCGACGACGAGGAAAGTCGACAGCCACTTGTTGTGTGA 1476 44.31 METMDDTYPSLVEVTQAEDVEENGEEEEGSKWWKTHILDTKEAKTQILFSLPMILTNAFYYLIPLVSVMFAGHLGELELAGATLANSWSTVTGFAFMIGSSGALETLCGQAFGAKCYRNLGLYLQASCLITFFFSVLISIFWFFTEPVLILLHQELDIAKKAGVYMKFLIPGLVAYGFLQNIVRFLQTQSEVVPLLIFSALPMAVHIPIAYLFVNVSSLGFEGAAMAVSVTIWIAFLVLAIYMLKSKKFENTWDGFSMDSFGYVFTNLKLAIPSAAMVCLEYWAFEILVLLAGLMPNPETTTSLIAMCVNTEAFAYMSTFGLSAAASTRVSNELGAGNLKQAKAAMAVTLKLSLLLAFVIVLALGFGHNIWASLFSDSHVIIKAFASITPFLVTSIIFDSIQGILSGAARGCGWQHFVVCINLATFYFVGMTVASVLGFKFKLHAKGLWIGLITGLFCQTISLVFVMWYGKWKKIILFETDDEESRQPLVV 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28261735 28264387 - Bpe012749.1 Bpe03g00840 101345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00840 491 CDD MATE_eukaryotic 42 474 IPR045069 GO:0042910|GO:1990961
Bpe03g00840 491 TIGRFAM matE: MATE efflux family protein 52 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe03g00840 491 PANTHER PROTEIN DETOXIFICATION 23 474 - -
Bpe03g00840 491 MobiDBLite consensus disorder prediction 1 28 - -
Bpe03g00840 491 Pfam MatE 52 212 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe03g00840 491 Pfam MatE 273 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bpe03g00840 491 PANTHER MULTIDRUG RESISTANCE PROTEIN 23 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00840 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - twl:119985384 641.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00840 Bpe-Chr3:28261735 Bpe12g00305 Bpe-Chr12:4865373 8.63E-113 dispersed
Bpe07g01043 Bpe-Chr7:15945033 Bpe03g00840 Bpe-Chr3:28261735 8.07E-119 transposed
Bpe14g00102 Bpe-Chr14:1486789 Bpe03g00840 Bpe-Chr3:28261735 6.50E-102 transposed
Bpe03g00840 Bpe-Chr3:28261735 Bpe09g00238 Bpe-Chr9:1715729 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g197 . . . . . . Bma10g00496 Bma13g00946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00759 . . . Bpe03g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00840 Bpe_Chr03 FPKM 8.716187 8.472183 10.389348 12.299887 23.168621 21.647724 23.608624 17.314117 15.934009 15.323741