Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00842 ATGGAGAACTTCATTTCTTCTTCTGACCAGCAAACAGAGAAGGCTGGAAACGAGAGTGACTTCAAAGTTCATGTTTTCTCTTCATCAACAGAGTTGGTCGAGAAACTGCATGAAAGCTGGAGCTTAATAAAAAAGCAACCATATCCTGCGATGTATTCCAGTGTTTTTGGTGGAATTATTCTTGATCCAGCATTGATGGTAATTCCAATTGATGATCACATGGTTCATCGTGGCCATGGTGTGTTCGACACGGCTATAATTTTAAACGGGTATCTATACGAGCTTGATGTCCATTTGGATCGGTTTCTAAGATCGGCTTCAAAGGCCAAAATCAGCTCTCCTTTTCCTCGATCAACTCTCCGAAGCATTCTTATCCAACTCACATCAACATCTAAGTGCAGAAAAGGAACCTTAAGATACTGGTTAAGTGCAGGGCCTGGAGATTTCTTGCTTTCACCGTCTGGCTGCTCAAAATCTGCATTTTATGCAGTCGTCATCGAAGATGAAGTTTCTCAGTGCAAAGAAGGGGTCAAAGTCATAACATCTACTATCCCCATGAAGTCACCCGAGTTTGCTACGATGAAGAACGTGAATTATCTCCCAAACGTGCTTTCGAAAATGGAGGCTGAAGAGAAAGGAGCATTTGCTTCGATATGGGTCGACGACGAAGGTTATGTTGCAGAAGGTCCAAATGTTAACGTTGCCTTCATAAACAGTGAGAAGGAGCTTATAATGCCATTGTTTGATAAGATTCTAAGTGGGTGTACGGCTTTGAGGCTTTTAGAACTTGCACCAAGGCTGGTTGAGAAGGGTCTTTTGAGAGCAGTAAAAACTACAAATATTACTCTACATGAAGCCAAAAAGGCTTCTGAAATGATGTATGTTGGAAGTACGCTCCCGATCCTGCCGATTATTGAGTGGGACGGACAATCCATCGAAGACGGAAGAGTCGGTGATTTGACGATGGCGCTTTCGGACCTGCTTTGGTGCGACATGATTGCTGGGTCGGAAACTCAGAGGATACTTGTTAGCTATGAGTAG 1041 43.23 MENFISSSDQQTEKAGNESDFKVHVFSSSTELVEKLHESWSLIKKQPYPAMYSSVFGGIILDPALMVIPIDDHMVHRGHGVFDTAIILNGYLYELDVHLDRFLRSASKAKISSPFPRSTLRSILIQLTSTSKCRKGTLRYWLSAGPGDFLLSPSGCSKSAFYAVVIEDEVSQCKEGVKVITSTIPMKSPEFATMKNVNYLPNVLSKMEAEEKGAFASIWVDDEGYVAEGPNVNVAFINSEKELIMPLFDKILSGCTALRLLELAPRLVEKGLLRAVKTTNITLHEAKKASEMMYVGSTLPILPIIEWDGQSIEDGRVGDLTMALSDLLWCDMIAGSETQRILVSYE 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28269837 28271670 - Bpe012750.1 Bpe03g00842 101347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00842 346 Pfam Amino-transferase class IV 80 306 IPR001544 GO:0003824
Bpe03g00842 346 PANTHER BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE-LIKE 8 344 - -
Bpe03g00842 346 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 56 330 IPR036038 GO:0003824
Bpe03g00842 346 Gene3D - 168 335 IPR043132 -
Bpe03g00842 346 Gene3D - 26 167 IPR043131 -
Bpe03g00842 346 PANTHER AMINO-ACID AMINOTRANSFERASE 8 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00842 K18482 ADCL; 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] - qsu:112000326 563.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00175 Bpe-Chr2:1218031 Bpe03g00842 Bpe-Chr3:28269837 1.58E-138 dispersed
Bpe03g00842 Bpe-Chr3:28269837 Bpe09g00605 Bpe-Chr9:14778625 3.13E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g177 . . . . . . . . . . . Cma09g00841 . Car09g00754 . . . Bhi09g03466 . . . Hepe01g1411 . . Cla11g01733 Cam11g1803 Cec11g1823 Cco11g1829 Clacu11g1962 Cmu11g1772 Cre11g2179 . Cone9ag0197 . . Lsi04g02043 Csa04g02315 Chy07g00050 Cme07g00568 Blo07g00954 . Bda05g00775 . . Bpe03g00842 . . . . Cmo09g00834 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011556 1 2 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 5 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00842 Bpe_Chr03 FPKM 20.641474 22.866726 27.129099 28.578768 44.159107 37.605278 40.945518 0.0 0.0 0.0