Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00849 ATGAGTCCTGGAGGCTGGTTTCGGATAATAATTAAGCGACGGAAAGCTAAGAAAGACAAAACCTGTGGAGAAAAGGTAGATTTAACGACAGGAAAGTATAATGGTTCTAAAGATAGGAAGAATCACATTCAAATAGAATCAAGCATTTCCAATGGTGATTTGAGTCAAAATGCATTGAGTCCTAGAAGATCCCTCAAAGATCTCGCCGCAACACAGATTCAGGCTGCATTTCGAGCATTTATGGCAAGAAAAGTTTTTAAATTTTCCAAAGGGACAGAGAGATTTCACGGGATACTTCGAGCTGACATGTCAAGAAAGCAAGCATCAGATGCATTAAGATACATACATTCATGGAGCAGGATGCAGAATGAAGTTAGAACTCGTCGACTATGCATGGTCACAGACCATACAACTCAACGAAAGAAACTGGAAAACCAGTTAAAACTCGATGCTAAGCTTCATGAACTTGAGGTGGAGTGGTGTGGTGGGTCTGAAACAATGGAGGAAATTCTTTCTAGAATTCACTATAGAGAAGAAGCAGCAGTTAGACGAGAGAGAGCCATGGCTTATGCATTCTCTCATCAGTGGAGAGCAAACTCAATATTGCATGTGAGCCCAGCATGTTACAGCATAGACAAAGAAAACTGGGGATGGAGCTGGAAACAGAGGTGGATAGCTGCTAGGCCATGGGAGATCAAAGCTCATGCTCACCCCACCATTCCTAAGAAACTACAAACCAAAATCTCCCCTAAATCTCCTCTCTCCGATGGAAAACACTCTCAAACCCATTAA 792 42.05 MSPGGWFRIIIKRRKAKKDKTCGEKVDLTTGKYNGSKDRKNHIQIESSISNGDLSQNALSPRRSLKDLAATQIQAAFRAFMARKVFKFSKGTERFHGILRADMSRKQASDALRYIHSWSRMQNEVRTRRLCMVTDHTTQRKKLENQLKLDAKLHELEVEWCGGSETMEEILSRIHYREEAAVRRERAMAYAFSHQWRANSILHVSPACYSIDKENWGWSWKQRWIAARPWEIKAHAHPTIPKKLQTKISPKSPLSDGKHSQTH 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28308222 28309732 + Bpe012757.2 Bpe03g00849 101354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00849 263 PANTHER IQ-DOMAIN 5-RELATED 3 247 - -
Bpe03g00849 263 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 3 247 - -
Bpe03g00849 263 MobiDBLite consensus disorder prediction 245 263 - -
Bpe03g00849 263 MobiDBLite consensus disorder prediction 241 263 - -
Bpe03g00849 263 Pfam IQ calmodulin-binding motif 69 87 IPR000048 GO:0005515
Bpe03g00849 263 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00849 - - - qlo:115954652 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00879 Bpe-Chr1:19093348 Bpe03g00849 Bpe-Chr3:28308222 3.46E-67 dispersed
Bpe03g00849 Bpe-Chr3:28308222 Bpe11g00883 Bpe-Chr11:6512334 1.16E-43 dispersed
Bpe03g00849 Bpe-Chr3:28308222 Bpe02g00495 Bpe-Chr2:3201970 1.09E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00849 Bpe_Chr03 FPKM 18.74473 19.163866 15.606396 17.40671 15.476556 17.001989 16.592022 26.407804 22.966003 23.891523