Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00860 TCGTTGATGGCCTTGCAAATGAGTTGGCAGTCGAGTTTACTGAGTCGGAAGAGGAAGAACAGTGCACCTCTCGGTCTGAGAAATCTCGGCAACACCTGCTATCTCAACAGCGTTCTTCAGTGCCTCACTTACACACCTCCCCTCGCTAATTTCTGCCTCCGAAACCAGCACTCCTCGCTATGCGATTCCGCATCTTCTGATACGGAGCGGAAGGGCAATTGTCCTTTTTGCATATTGGAGAGGCGAATAGTTCGTTCTTTGAGCGCGGATCTCACTTTGGATGCTCCTCTTAAGACCCAGAACTGTCTTAAGATCTTTGCTGAGCATTTTCGATTGGGACGTCAGGAGGACGCTCATGAGTTTCTTCGCTATGTCATAGATGCTTGCCATAACACCTGTCTTCGGTTGAAGAAACTTCGACGTAATGACAGCTCCTGTGGAATTGGTGGCGTCACGGTTGTGAAGGATATATTTGGAGGTTCCTTGCAGAGCCAAGTGAAGTGTTTATCCTGTGGCAACGATTCAAATAAGATTGATGAGATGATGGATATAAGTCTTGATATTTTGCATAGTAATTCGCTTAAAGAGTCCTTGCATAAGTTCTTTCAGCCTGAGACTTTGGATGGCTCTAACAAGTACAAGTGTGACAGTTGTAATAAGTTGGTGGCAGCGAGAAAGCAAATGTCTATACTTCAAGCTCCAAATGTGCTGGTAGTTCAACTCAAGAGATTCGAGGGCATATTTGGTGGGAAGATTGACAAGGCCATTGCCTTTGAAGAGGTTTTGCTGCTTTCAAGTTTCATGTGCAAAAGAAGCCAGGATCCTCGGCCAGAATACAAGCTCTTTGGTACTATTGTCCATTCAGGATTCTCTCCAGAGTCTGGACATTATTATGCATATATTAAGGATGCCATGGGTCAATGGTTTTGCTGCAATGACTCTTATGTTTCAGTTTCTAGTCTGCAGGAGGTGTTGTCAGAAAAGGTTTATATTCTTTTCTTTTCTAGAACTAACCAAAGGACACAATCTGCTTGTTCAGCGCTTGCCTCCAATGGTGTGAAGTCTCATGCTGGTAATGGAAGGGAAGAATTGAAAAGCCCAAAGATGGCGTCTTTGGTGCATGAAAAATCTAATGGTGGACAATATTCACAGAAGAACCTGGATATCTTGTCTAAGGTTGACAAACTGCCTTCCAACCCTCAAATGGATTTTGATATAGTTGGAAGCTCTAATCCCAGAACTTCTACACCCACTGTCAATGGAAAGATTGCTGTTTCTACAAATAACTGCTCCGCTGCAAATGTGAATGAGAATAAAAAATTTAATATAGTGCCAAGTGTGAATAACAAGTCATTCCTAACAAATGGAAATGGCGTCATTAGCCACAAAAAGGTCAATGGCATCAACTGGGAGCGGAGTAAAATATCTGTCATAATGAATGGAAATGGTAAGGCTGAGTGTGGGGGGATCAATTTGATGAAGTCAGAATATGATGTTAGTAATGGCATGAGCAACACATTTATTGCAAAAAGGCTGGATGATGGAGATGTTAACTCCCACTCAAAGGTCAATGGGTCCAAAAGAAAATTGCCTAACGACACTTGTGTATTGCTTCAACAGGATGCTAAATCTCTGGCAAAGGTTGAAGAATTGAAGGAAGTTCTCAAGAACGAAGCCTTTTCAATTCTACGATCATGTGGCTGGTCAGAGGAGGTCTACAATTTGATGCATTCTATGAAGAAGTTACGTGCACAGCAAATGGAAATCACTTCAACGACTGCTGCTAATGAGTTGAAGAAATTGCTGATTGCTGAGGTGAAACCAAACGTTATTTCCCAGATACCTGAGTCATTGAAAGAGAACCTCATTGGGCGCCTTCAGTTATTTAGCAAGCAAAAGTGA 1902 42.48 SLMALQMSWQSSLLSRKRKNSAPLGLRNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDTERKGNCPFCILERRIVRSLSADLTLDAPLKTQNCLKIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNDSSCGIGGVTVVKDIFGGSLQSQVKCLSCGNDSNKIDEMMDISLDILHSNSLKESLHKFFQPETLDGSNKYKCDSCNKLVAARKQMSILQAPNVLVVQLKRFEGIFGGKIDKAIAFEEVLLLSSFMCKRSQDPRPEYKLFGTIVHSGFSPESGHYYAYIKDAMGQWFCCNDSYVSVSSLQEVLSEKVYILFFSRTNQRTQSACSALASNGVKSHAGNGREELKSPKMASLVHEKSNGGQYSQKNLDILSKVDKLPSNPQMDFDIVGSSNPRTSTPTVNGKIAVSTNNCSAANVNENKKFNIVPSVNNKSFLTNGNGVISHKKVNGINWERSKISVIMNGNGKAECGGINLMKSEYDVSNGMSNTFIAKRLDDGDVNSHSKVNGSKRKLPNDTCVLLQQDAKSLAKVEELKEVLKNEAFSILRSCGWSEEVYNLMHSMKKLRAQQMEITSTTAANELKKLLIAEVKPNVISQIPESLKENLIGRLQLFSKQK 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28400383 28406250 + Bpe012768.1 Bpe03g00860 101365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00860 633 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 15 356 - -
Bpe03g00860 633 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 356 - -
Bpe03g00860 633 Pfam Ubiquitin carboxyl-terminal hydrolase 25 334 IPR001394 GO:0004843|GO:0016579
Bpe03g00860 633 CDD Peptidase_C19E 23 335 - -
Bpe03g00860 633 Coils Coil 538 558 - -
Bpe03g00860 633 Gene3D Cysteine proteinases 17 339 - -
Bpe03g00860 633 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 279 297 IPR018200 GO:0004843|GO:0006511
Bpe03g00860 633 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 337 IPR028889 -
Bpe03g00860 633 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Bpe03g00860 633 SUPERFAMILY Cysteine proteinases 17 336 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00860 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - zju:107423322 743.806
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00860 Bpe-Chr3:28400383 Bpe04g00420 Bpe-Chr4:2709267 3.26E-55 dispersed
Bpe14g00559 Bpe-Chr14:4780864 Bpe03g00860 Bpe-Chr3:28400383 1.56E-27 dispersed
Bpe01g00765 Bpe-Chr1:7446066 Bpe03g00860 Bpe-Chr3:28400383 1.84E-33 transposed
Bpe02g00532 Bpe-Chr2:3442718 Bpe03g00860 Bpe-Chr3:28400383 4.29E-32 transposed
Bpe04g01101 Bpe-Chr4:8757614 Bpe03g00860 Bpe-Chr3:28400383 7.38E-13 transposed
Bpe10g00069 Bpe-Chr10:957020 Bpe03g00860 Bpe-Chr3:28400383 1.38E-33 transposed
Bpe11g00335 Bpe-Chr11:2434575 Bpe03g00860 Bpe-Chr3:28400383 9.52E-43 transposed
Bpe15g00456 Bpe-Chr15:15972747 Bpe03g00860 Bpe-Chr3:28400383 5.41E-26 transposed
Bpe15g00967 Bpe-Chr15:19299379 Bpe03g00860 Bpe-Chr3:28400383 1.17E-26 transposed
Bpe03g00860 Bpe-Chr3:28400383 Bpe09g00279 Bpe-Chr9:2108274 0 wgd
Bpe03g00860 Bpe-Chr3:28400383 Bpe09g00279 Bpe-Chr9:2108274 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00860 Bpe_Chr03 FPKM 12.821473 16.625237 5.144376 5.789336 8.602001 8.922252 7.892589 0.297163 0.125919 0.265022