Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00871 ATGAAGATTCAATGCAACGTCTGCGAGGCGGCGGAGGCGCAGGTTCTATGTTGCGCTGACGAGGCGGCGCTATGCTGGGCTTGCGACATGAAGGTTCACGCTGCCAACAAACTGGCTAGCAAGCACCAGAGGGTTCCTCTCTCTGGCTCTTCTTCCCAAATGCCCAAATGTGACATTTGCCAGGAGATGGGTGGCTACATCTTTTGTTTGGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTTGCCATTCACACGGCGAATACTTACGTGTCGGCTCATCAGAGGTTTCTTCTCACTGGTGTCAAAGTCGGTCTTGAACCTGCAGGACCTCCTGCTTCCTCTTCCGAATCAAACCCCCACACGGGAGAGAAAATGTTTGAACTGAAATCTGGCTCGGGGCCCCCAAGGCGCTTCTCAACGCCGTCAGTTGGTGAATTCGGTCAACAGTTGCCTGTAAGCTCTCGTGGTGTTGGGGACTATGCACAAACTAAGGTAATTACGCATAATGGAGGATTCGTATCGGGTGGGCTTCCTCTGTGGCAATTAGACGAGTTAATGGGGATTACAGGATTCGGTCAAAACTATGGCTGTGGCTCTATGGACAATGATTCAACAAAGGCTGATAGCGGTAAGCTCGGGGATTCTGATTCGTCCTTTCTAAGAACAGGCGTGGAAGATCTTGATGACGAAGAGTGCTTGGGTCAGGTACCGGATGCTTCATGGGCAGTTCCTCACAACCCATCCCCACCCACGGCCTCAGGACTGTATTGGCCGAGAAATTACAACAGTTGTTTGGATAGCTCGGTCTATGTTCCCGACATATGCAGCTCACCTGAGCAAAAGCCCCACCATCATCGACGAAATGGTATGGAACCAAAACGCAGAAGACAATTC 897 50.95 MKIQCNVCEAAEAQVLCCADEAALCWACDMKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMGGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVGLEPAGPPASSSESNPHTGEKMFELKSGSGPPRRFSTPSVGEFGQQLPVSSRGVGDYAQTKVITHNGGFVSGGLPLWQLDELMGITGFGQNYGCGSMDNDSTKADSGKLGDSDSSFLRTGVEDLDDEECLGQVPDASWAVPHNPSPPTASGLYWPRNYNSCLDSSVYVPDICSSPEQKPHHHRRNGMEPKRRRQF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28466255 28467889 + Bpe025398 Bpe03g00871 101376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00871 299 MobiDBLite consensus disorder prediction 276 299 - -
Bpe03g00871 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bpe03g00871 299 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bpe03g00871 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bpe03g00871 299 MobiDBLite consensus disorder prediction 108 138 - -
Bpe03g00871 299 CDD Bbox1_BBX-like 5 47 - -
Bpe03g00871 299 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bpe03g00871 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 298 - -
Bpe03g00871 299 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Bpe03g00871 299 Gene3D Classic Zinc Finger 1 93 - -
Bpe03g00871 299 CDD Bbox1_BBX-like 56 99 - -
Bpe03g00871 299 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 298 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00871 Bpe-Chr3:28466255 Bpe04g00902 Bpe-Chr4:6044861 6.90E-45 dispersed
Bpe13g00423 Bpe-Chr13:11855165 Bpe03g00871 Bpe-Chr3:28466255 5.58E-23 dispersed
Bpe03g00871 Bpe-Chr3:28466255 Bpe09g00270 Bpe-Chr9:2009553 1.27E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21127 PF00643 zf-B_box 6.50E-06 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00871 - - csv:101209756 387.111