Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00871 ATGAAGATTCAATGCAACGTCTGCGAGGCGGCGGAGGCGCAGGTTCTATGTTGCGCTGACGAGGCGGCGCTATGCTGGGCTTGCGACATGAAGGTTCACGCTGCCAACAAACTGGCTAGCAAGCACCAGAGGGTTCCTCTCTCTGGCTCTTCTTCCCAAATGCCCAAATGTGACATTTGCCAGGAGATGGGTGGCTACATCTTTTGTTTGGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTTGCCATTCACACGGCGAATACTTACGTGTCGGCTCATCAGAGGTTTCTTCTCACTGGTGTCAAAGTCGGTCTTGAACCTGCAGGACCTCCTGCTTCCTCTTCCGAATCAAACCCCCACACGGGAGAGAAAATGTTTGAACTGAAATCTGGCTCGGGGCCCCCAAGGCGCTTCTCAACGCCGTCAGTTGGTGAATTCGGTCAACAGTTGCCTGTAAGCTCTCGTGGTGTTGGGGACTATGCACAAACTAAGGTAATTACGCATAATGGAGGATTCGTATCGGGTGGGCTTCCTCTGTGGCAATTAGACGAGTTAATGGGGATTACAGGATTCGGTCAAAACTATGGCTGTGGCTCTATGGACAATGATTCAACAAAGGCTGATAGCGGTAAGCTCGGGGATTCTGATTCGTCCTTTCTAAGAACAGGCGTGGAAGATCTTGATGACGAAGAGTGCTTGGGTCAGGTACCGGATGCTTCATGGGCAGTTCCTCACAACCCATCCCCACCCACGGCCTCAGGACTGTATTGGCCGAGAAATTACAACAGTTGTTTGGATAGCTCGGTCTATGTTCCCGACATATGCAGCTCACCTGAGCAAAAGCCCCACCATCATCGACGAAATGGTATGGAACCAAAACGCAGAAGACAATTC 897 50.95 MKIQCNVCEAAEAQVLCCADEAALCWACDMKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMGGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVGLEPAGPPASSSESNPHTGEKMFELKSGSGPPRRFSTPSVGEFGQQLPVSSRGVGDYAQTKVITHNGGFVSGGLPLWQLDELMGITGFGQNYGCGSMDNDSTKADSGKLGDSDSSFLRTGVEDLDDEECLGQVPDASWAVPHNPSPPTASGLYWPRNYNSCLDSSVYVPDICSSPEQKPHHHRRNGMEPKRRRQF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28466255 28467889 + Bpe025398 Bpe03g00871 101376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00871 299 MobiDBLite consensus disorder prediction 276 299 - -
Bpe03g00871 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bpe03g00871 299 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bpe03g00871 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bpe03g00871 299 MobiDBLite consensus disorder prediction 108 138 - -
Bpe03g00871 299 CDD Bbox1_BBX-like 5 47 - -
Bpe03g00871 299 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bpe03g00871 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 298 - -
Bpe03g00871 299 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Bpe03g00871 299 Gene3D Classic Zinc Finger 1 93 - -
Bpe03g00871 299 CDD Bbox1_BBX-like 56 99 - -
Bpe03g00871 299 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00871 - - - csv:101209756 387.111
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00871 Bpe-Chr3:28466255 Bpe04g00902 Bpe-Chr4:6044861 6.90E-45 dispersed
Bpe13g00423 Bpe-Chr13:11855165 Bpe03g00871 Bpe-Chr3:28466255 5.58E-23 dispersed
Bpe03g00871 Bpe-Chr3:28466255 Bpe09g00270 Bpe-Chr9:2009553 1.27E-168 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01781 . 1 376 Orphan Transcription Factor Family AT5G61850 61.8 8.2e-121 430.6
Bpe15g01214 . 1 304 Orphan Transcription Factor Family AT5G61850 57.9 8.8e-83 304.3
Bpe04g00902 CCT 1 157 Orphan Transcription Factor Family AT1G06040 64.3 2.3e-53 205.3
Bpe05g00975 CCT 1 153 Orphan Transcription Factor Family AT1G06040 63.1 1.7e-51 199.1
Bpe09g00270 . 1 110 Orphan Transcription Factor Family AT1G06040 64.5 1.4e-37 152.9
Bpe03g00871 . 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.3e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21127 PF00643 zf-B_box 6.50E-06 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00871 Bpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0