Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00872 ATGAATCGCTTATACTTCGCTTTACTCCAGTTAGGGGTTCTTTCTCTCTCCATCAGCTTCTTCCTCGCCACTCCTGCCTTCTCCGCCGTTCTTCCTCCCGATGAAGTGGACACTCTGCGGTTGATCGGAGGAACATTAGGGAAGATCTGGAATTTCAGTGTAGATCCATGCAGTGCAACAGACGGCTGGGTTTCAAAGAACGCGTCGATTCCAGGCTTTGAAAATATCCTCGGCTGCAACTGTACCTTCAATGAATCTACCGTCTGTCACGTTGTCAATATATCTCTCAAGTCACAGAGTCTTCAAGGAACTCTCCCTCCACAAATAGCCAATCTGTCTTACCTGGAACAGCTTGATCTCTCCCGGAATTATCTGAACGGCTCAATTCCGCCGGAATGGGGAAACTCCACGAGTCTCCTCGGCATTTCTCTTCTTGGCAACCGCTTGACTGGTACGGTGCCAAAAGAACTCGGAAAGATCCTCACTCTTCAAAGCCTGGTCCTGGAAATCAATCAACTGTCTGGAACTCTTCCTCCGGAGCTCGGAAGTTTGTCCTTATTGGAAAGACTACTTCTTACCTCTAACAATTTCACTGGGGAGTTGCCTGGAACGTTTGTTGGATTAACCTCACTGAAGGACATTCGCCTTGGTGACAATCAATTTACAGGCCAGATACCCAATTTTATTCAAAGCTGGACCAATCTCGACAAGATGGTGCTCCAAGCGAGTGGATTTACAGGGCCAATTCCTTCTGGCATATCACTTTTGAGCAAAGTGACTGATTTGAGGATCAGTGACTTAACTGGATCTGCGGCGCCTTTTCCTCCCATTAGTAATACTACGAAATTGAAAGTACTCATATTAAGAAGCTGCAATATTACTGGAAGGCTGCCCGATTATCTGGTGAATATGGGAAGCACATTGAAAACCCTAGACCTTAGCTTTAACAAGCTACAAGGGCCAATTCCTGACGGCTATGATGCTCTTAAAAAAGTGGATAATGTGATTTTAACTGGAAACATGCTCAATGGATCAGTGCCTGATTGGATGCTCCAAGGAAGTACAGATAGCTTTGATATCTCATATAACAACTTCTCTGTAGGCAACAATAGTTCCTCAAGCTGCCAACAACAAAATGTGAATGTATTTGCAGCTACAGCAAAAGGAAATAGTTCTGGAATTGTTTCGTGCTTGGGGAAAGACCGTTGTGCACAAACTAGTTATTCACTGCTAATAAATTGTGGTGGAAAGGAAACAACAATCAATGGAACTAAAATTTTTGGCGATGATACAAGTGATGTTAGATCATCAAGGTTTGTCGAAAGTAGATACACCAATTGGGGGATGAGTAATACGGGTATCTTCATGGATGATGACCGCCCAACTGACGCCTACATTTTGGCAAACTCATCTGCGCTCTCAATGACAACCAATTCTGAACTATATACAACTGCTCGGCTCTCTGCACTCTCTCTTACTTACTATGGATATTGTCTTGGAAATGGACCCTACACTGTTCACCTCCATTTTGCAGAGATAATGTTTACTAATGATAAGACATTTAGCAGTCTTGGTAGGCGCATATTTAATGTTTACATTCAGGGAAAGCTGGTGCTGGAGAATTTTGATATTGCAAGAGAAGCAGGTGGGGTTGGCATGGCTGTGGTGAAAAGTTTTCCCGTCAATATTACAGATGGTACCATGGAAATTCGTTTCTATTGGGCGGGAAAGGGGACAATTGCTATTCCAGTAAGAGGAGTCTATGGCCCTCTAATTTCAGCCATTTCAGTAGATCCTGACTTTGAGCCTCCAGCGGAAGCAGGAGAAGATAGCAGTAGCATGTCAGCCGGGGTTGTTGTTGGAATTGTAGCTGCAGTGCTAGTCATGATATTGCTCATTCTAGGAATCTTGTGGTGGAAAGGCTGTATTGGCAAGAAAAAAACAATGGACGAAGATCTAAGAGGTTTAGATCTTCAAACTGGTTCATTTACCTTGCGGCAAATGCGAGCTGCCACTAACAACTTTGATTCAGCTTATAAGATTGGCGAGGGTGGTTTTGGTCCTGTTTACAAGGGTCTTCTAGCAGACGGGACCATAATAGCAGTGAAACAGCTTTCTTCAAAATCAAAGCAAGGAAATCGAGAGTTTATTAACGAGATTGGCATGATATCTGCTCTGCAGCACCCAAATCTCGTTAAGCTTTATGGATGTTGCATTGAAGGAAATCAACTACTGTTAATATACGAGTACTTGGAGAATAACAGCCTTGCTCGAGCTCTATTCGGCCCTGAAGAACACCAATTGAAACTTGATTGGCGGACAAGATACAATATTTGTATTGGTATTGCAAGAGGTTTGGCTTATCTTCATGAAGAGTCGAGATTGAAGATCGTTCATCGAGACATTAAGGCAACCAATGTTCTGCTCGATAAAAATCTTGAACCAAAAATTTCTGACTTTGGATTGGCCAAGCTTGACGAAGAAGGAAATACACACATTAGCACTCGAGTCGCCGGAACCTTCGGATATATGGCACCGGAGTATGCAATGAGAGGCTATTTGACTGATAAAGCTGACGTGTATAGCTTTGGTATCGTGGCACTGGAAATTGTCAGTGGAAGAAGCAACACAAGTTACCGGCCAAAAGAGGAATGCTTTTACCTTCTTGATTGGGCACTTATTTTAAAAGAGAAATCAAGTCTGCTTGACCTAGTCGACGAAAGATTAGGATCAGACTTCAACAAAAAGGAGGCAATGGTGATGATCAATCTGGGTCTCCAATGCACCAACGTTTCTCCAGCAGTGAGGCCATTGATGTCCAACGTTGTGAGCATGCTTGAAGGTAGAGTCCTTCCCAAGGAGACGGTTCCCGATCCCAACGCCTCAAAAGAAGCCATGAATGCAATGTGGAGCCAGTATCAGCGCGACAAAGAGAGTCGCACAAATGATAGTCAGAATCAGAGCATATCTTTGGATGCACCATGGACTAGTTCTTCAGCATCTGCTGTAGATCTCTATCCAATCAACATGGATTCTGCCTACTTGAATAACCGGGAGTGA 3060 43.66 MNRLYFALLQLGVLSLSISFFLATPAFSAVLPPDEVDTLRLIGGTLGKIWNFSVDPCSATDGWVSKNASIPGFENILGCNCTFNESTVCHVVNISLKSQSLQGTLPPQIANLSYLEQLDLSRNYLNGSIPPEWGNSTSLLGISLLGNRLTGTVPKELGKILTLQSLVLEINQLSGTLPPELGSLSLLERLLLTSNNFTGELPGTFVGLTSLKDIRLGDNQFTGQIPNFIQSWTNLDKMVLQASGFTGPIPSGISLLSKVTDLRISDLTGSAAPFPPISNTTKLKVLILRSCNITGRLPDYLVNMGSTLKTLDLSFNKLQGPIPDGYDALKKVDNVILTGNMLNGSVPDWMLQGSTDSFDISYNNFSVGNNSSSSCQQQNVNVFAATAKGNSSGIVSCLGKDRCAQTSYSLLINCGGKETTINGTKIFGDDTSDVRSSRFVESRYTNWGMSNTGIFMDDDRPTDAYILANSSALSMTTNSELYTTARLSALSLTYYGYCLGNGPYTVHLHFAEIMFTNDKTFSSLGRRIFNVYIQGKLVLENFDIAREAGGVGMAVVKSFPVNITDGTMEIRFYWAGKGTIAIPVRGVYGPLISAISVDPDFEPPAEAGEDSSSMSAGVVVGIVAAVLVMILLILGILWWKGCIGKKKTMDEDLRGLDLQTGSFTLRQMRAATNNFDSAYKIGEGGFGPVYKGLLADGTIIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPEEHQLKLDWRTRYNICIGIARGLAYLHEESRLKIVHRDIKATNVLLDKNLEPKISDFGLAKLDEEGNTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGRSNTSYRPKEECFYLLDWALILKEKSSLLDLVDERLGSDFNKKEAMVMINLGLQCTNVSPAVRPLMSNVVSMLEGRVLPKETVPDPNASKEAMNAMWSQYQRDKESRTNDSQNQSISLDAPWTSSSASAVDLYPINMDSAYLNNRE 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28467824 28479284 - Bpe012779.2 Bpe03g00872 101377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00872 1019 CDD STKc_IRAK 681 948 - -
Bpe03g00872 1019 Gene3D Ribonuclease Inhibitor 45 195 IPR032675 -
Bpe03g00872 1019 ProSiteProfiles Protein kinase domain profile. 675 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00872 1019 Gene3D Transferase(Phosphotransferase) domain 1 751 965 - -
Bpe03g00872 1019 Pfam Malectin domain 409 595 IPR021720 -
Bpe03g00872 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 797 809 IPR008271 GO:0004672|GO:0006468
Bpe03g00872 1019 Gene3D Ribonuclease Inhibitor 266 391 IPR032675 -
Bpe03g00872 1019 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Bpe03g00872 1019 MobiDBLite consensus disorder prediction 983 997 - -
Bpe03g00872 1019 SMART serkin_6 675 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00872 1019 MobiDBLite consensus disorder prediction 973 997 - -
Bpe03g00872 1019 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 78 296 - -
Bpe03g00872 1019 SUPERFAMILY L domain-like 86 349 - -
Bpe03g00872 1019 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 294 366 - -
Bpe03g00872 1019 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 391 987 - -
Bpe03g00872 1019 SUPERFAMILY Protein kinase-like (PK-like) 660 973 IPR011009 -
Bpe03g00872 1019 Gene3D - 405 599 - -
Bpe03g00872 1019 Gene3D Phosphorylase Kinase; domain 1 643 750 - -
Bpe03g00872 1019 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 294 366 - -
Bpe03g00872 1019 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 391 987 - -
Bpe03g00872 1019 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 78 296 - -
Bpe03g00872 1019 Pfam Protein tyrosine and serine/threonine kinase 679 946 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00872 Bpe-Chr3:28467824 Bpe08g00744 Bpe-Chr8:9031379 0 dispersed
Bpe08g00743 Bpe-Chr8:9020684 Bpe03g00872 Bpe-Chr3:28467824 1.04E-79 dispersed
Bpe03g00872 Bpe-Chr3:28467824 Bpe03g00873 Bpe-Chr3:28496208 0 tandem
Bpe11g01119 Bpe-Chr11:8355601 Bpe03g00872 Bpe-Chr3:28467824 0 transposed
Bpe12g00045 Bpe-Chr12:364173 Bpe03g00872 Bpe-Chr3:28467824 1.87E-122 transposed
Bpe12g00277 Bpe-Chr12:3049621 Bpe03g00872 Bpe-Chr3:28467824 0 transposed
Bpe03g00872 Bpe-Chr3:28467824 Bpe09g00294 Bpe-Chr9:2347478 5.89E-104 wgd
Bpe03g00872 Bpe-Chr3:28467824 Bpe09g00268 Bpe-Chr9:1967856 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63252 PF07714 PK_Tyr_Ser-Thr 8.50E-47 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00872 - - csv:101221782 1277.69