Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00873 ATGACTTCAGATCATTCCTTGTTTATCAATTGTGGAGGAAGAAGCGTAGAAATTGATGGCAATCAATATGAAGAGGACTTGTTTAGTGAAGGCAGATCAAACTTTTATTCAGTTGGAGAAAGGTGGGGTTACAGCAGTACAGGGATTTTCATGGGTGAAGAGAAGGCTCCTAACTTAGCAGAGAATACCTTTGGTCTGAACTTGAGTGGGCCGAGCTTCTATGAGACAGCTCGACTCTCCCCACTGTCACTTAAGTACTATGGCCTTTGCCTTCGAAAGGGGAGTTATAATGTCAAGCTGCATTTTGCAGAAATAATGTATTCTGATAACCAGAATTTTAGTAGTCTGGGCAGGCGTATATTTGATGTCTCAATTCAAGGAAATTTAGTTTTAAAGGACTTTAATATTGTGGAAAAAGCTGGAGGAGTTGGTAAAGGCTACACTTACGAAAATACAGATGTTATCGTTAATGGCAGCACTCTAGAGATCCACTTATACTGGGCGGGTAAAGGAACTACTGCTATTCCAGACAGAGGAGTTTACGGACCTCTTATATCTGCTATCACAGTAACACCAAGCAATTTATCATTTTTTGTTACAGACTTTGAGGTTGAGACAGGAGGCTTATCCGCTGGAGCTATTGCTGGCATTGTAATTGCTTCATGTGTGTTAGTCATATTGGTACTTGTTGTCCTTTGGATCAAAGGTTACATATGTGCAAAAGAGATTGTAGACAGTGAATTGCAAGGGCTTGAATTGCAAACAGGTTTTTTCTCTTTGAGACAAATCAAATCTGCTACTGGCAACTTCGATTCTAAAAATAAGATTGGTGAAGGAGGCTTTGGACCAGTGTACAAGGGAGTTCTTTCAGACGGATCCTTAATTGCTGTCAAGCAACTTTCCTCTAAATCGAAGCAAGGGAATCGTGAATTTGTCACTGAAATAGGCATGATATCTGCTTTGCAGCACCCAAATCTTGTTAGACTTTATGGGTGTTGCACTGAAGGACATCAGTTGTTGCTAATATATGAATATATGGAAAACAATAGTCTCGCACGTGCTCTCTTTGGTAAATTATTCAGCAGTCCCGAGGAACATCGTCTCCACTTAGACTGGGCGACAAGGAAGAGGATATGCTTGGGAATAGCGAAGGGATTAGCTTATCTTCACGAGGAATCGAGGTTGAAAATTGTGCACAGAGATATAAAGGCTACAAATGTGTTGCTTGATAAAAATCTAACGGCAAAGATCTCTGACTTTGGCTTGGCGAAGCTTGATGAAGAGGAGAATACCCACATTAGTACTCGGATTGCTGGAACCATAGGTTACATGGCTCCTGAATATGCAATGAGGGGTTACTTAACTGACAAAGCAGATGTCTACAGCTTTGGTGTTGTGGCATTGGAGATTGTCAGTGGAAAAAGCAACACAAATTACAGGCCAAAGGAAGAGTTTGTTTATCTTCTTGATTGGGCAAAGCAAGGCAACCTTCTAGAACTTGTGGATCCGAGCCTCGGTTCAAACTATTCGAAGGAAGAGACTATGGTGATGCTCAACGTGGCACTCTTATGCACCAACCCATCTCCCACACTGAGACCCCCCATGTCTTCTGTAGTGCGCATGCTTGAAGGGAAAATTGCAGTCCAAGCACCCTTAGTCAAACGCACGACGGAGCAAGATGCAAGATTTAGGGCCTTTGAGAAGCTTTCACAAGACAGCCAAACAATAGTCTCGTCAATCTCTCAAGACAGTCAGATTCAGAAAAGCATGTCAATTGATGGGCCTTGGGTTGATTCCTCAGTTTCTGTTCAAAGTAAAGATGAAACCCGTGACCATTCTTCGTCAAGTAAGCTCTTGGAATCTTTGATATAA 1872 41.88 MTSDHSLFINCGGRSVEIDGNQYEEDLFSEGRSNFYSVGERWGYSSTGIFMGEEKAPNLAENTFGLNLSGPSFYETARLSPLSLKYYGLCLRKGSYNVKLHFAEIMYSDNQNFSSLGRRIFDVSIQGNLVLKDFNIVEKAGGVGKGYTYENTDVIVNGSTLEIHLYWAGKGTTAIPDRGVYGPLISAITVTPSNLSFFVTDFEVETGGLSAGAIAGIVIASCVLVILVLVVLWIKGYICAKEIVDSELQGLELQTGFFSLRQIKSATGNFDSKNKIGEGGFGPVYKGVLSDGSLIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVRLYGCCTEGHQLLLIYEYMENNSLARALFGKLFSSPEEHRLHLDWATRKRICLGIAKGLAYLHEESRLKIVHRDIKATNVLLDKNLTAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAKQGNLLELVDPSLGSNYSKEETMVMLNVALLCTNPSPTLRPPMSSVVRMLEGKIAVQAPLVKRTTEQDARFRAFEKLSQDSQTIVSSISQDSQIQKSMSIDGPWVDSSVSVQSKDETRDHSSSSKLLESLI 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28496208 28499640 + Bpe012780.1 Bpe03g00873 101378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00873 623 CDD STKc_IRAK 276 544 - -
Bpe03g00873 623 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 580 - -
Bpe03g00873 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Bpe03g00873 623 Gene3D Phosphorylase Kinase; domain 1 239 345 - -
Bpe03g00873 623 Gene3D - 3 194 - -
Bpe03g00873 623 SUPERFAMILY Protein kinase-like (PK-like) 254 543 IPR011009 -
Bpe03g00873 623 Pfam Malectin domain 7 188 IPR021720 -
Bpe03g00873 623 Gene3D Transferase(Phosphotransferase) domain 1 346 565 - -
Bpe03g00873 623 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 580 - -
Bpe03g00873 623 MobiDBLite consensus disorder prediction 591 623 - -
Bpe03g00873 623 SMART serkin_6 270 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe03g00873 623 Pfam Protein tyrosine and serine/threonine kinase 273 541 IPR001245 GO:0004672|GO:0006468
Bpe03g00873 623 ProSiteProfiles Protein kinase domain profile. 270 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00873 Bpe-Chr3:28496208 Bpe09g00268 Bpe-Chr9:1967856 0 dispersed
Bpe03g00873 Bpe-Chr3:28496208 Bpe03g00881 Bpe-Chr3:28580832 3.95E-106 proximal
Bpe03g00872 Bpe-Chr3:28467824 Bpe03g00873 Bpe-Chr3:28496208 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63253 PF07714 PK_Tyr_Ser-Thr 2.50E-49 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00873 - - jre:108985003 909.827