Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00874 ATGACTTCAGGAACAAGGCTACCAACATGGAGGGAGAGGGAAAACAACAAGAGAAGGGAGAGAAGGAGGAGAGCTATAGCGGCGAAGATCTTCACTGGTCTCAGAATGTACGGAAACTATAAGCTCCCGAAACACTGCGATAACAATGAGGTCCTTAAAGCTCTCTGCGACGAGGCCGGTTGGACCGTAGAATCCGACGGCACCACCTACCGTAAGGGATTTAAACCTGTTGAAAGAATAGATCTTGTTGGTGGGTTGCCAGCGGCTGCCTCATCTCAGCATCACAGTCCATATGCTTCCTTCATTCCGAGCCCCAGTTCTTCCTCTTTTCCTAGTCCAGTCTCATCTTCGTATACTGCTGCTAATCCTACAACAGATGGAAATTCCCTCATCCCTTGGCTTAAAAATCTTTCATCTGCCTCATCATCAGCCTCCTCTTCCAAGCGCCCTCACCTCTATATCCATGGAGGCTCTGTCAGTGCTCCAGTTACCCCACCTTTGAGCTCACCAAGTGCCAAAACACCCCGAATTAGAGCCAATTGGGAAGAACAAACCACAGCTCCTGGTTGGACTGCTCAACAATACTCGATCCTACCATCTTCTGCTCTACCAAGCCCTCCGTCTTCTACTCCACCAAGCCCTGGCCGCCAGATTTTTCCAGATCCAGAATGGTTTTCTGGAATTAGAATTCCTTACAGTGGACCAACTTCTCCAACGTTCAGCCTTGTCTCTTCTAACCCATTTGTCTTTAAGGAAGAGGCGTTAACTGGTGGTGGATCGCGTATGTGGACTCCCGGGCAAAGCGGGACATGCTCTCCGGCCATTGCAGCAGGCTCTGATCACACTGCAGACATTCCGATGTCTGAACTTATTTCAGATGAGTTTGCATTTGGAAGCAATGCAACTGGAATAGTTAAGCCTTGGGAAGGAGAGAGGATCCATGAAGATTCTGGATCAGATGATCTCGAGCTGACCCTTGGGAGTTCAAGGACAAGG 996 49.2 MTSGTRLPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVESDGTTYRKGFKPVERIDLVGGLPAAASSQHHSPYASFIPSPSSSSFPSPVSSSYTAANPTTDGNSLIPWLKNLSSASSSASSSKRPHLYIHGGSVSAPVTPPLSSPSAKTPRIRANWEEQTTAPGWTAQQYSILPSSALPSPPSSTPPSPGRQIFPDPEWFSGIRIPYSGPTSPTFSLVSSNPFVFKEEALTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSELISDEFAFGSNATGIVKPWEGERIHEDSGSDDLELTLGSSRTR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28501935 28505062 - Bpe025399 Bpe03g00874 101379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00874 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 206 - -
Bpe03g00874 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 207 332 - -
Bpe03g00874 332 MobiDBLite consensus disorder prediction 204 218 - -
Bpe03g00874 332 MobiDBLite consensus disorder prediction 1 20 - -
Bpe03g00874 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 207 332 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bpe03g00874 332 MobiDBLite consensus disorder prediction 308 332 - -
Bpe03g00874 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 206 IPR033264 GO:0003700|GO:0006351|GO:0009742
Bpe03g00874 332 MobiDBLite consensus disorder prediction 198 219 - -
Bpe03g00874 332 MobiDBLite consensus disorder prediction 156 175 - -
Bpe03g00874 332 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 138 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00874 - - - tcc:18594295 509.99
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00874 Bpe09g00267 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00874 Bpe-Chr3:28501935 Bpe06g00056 Bpe-Chr6:673237 7.91E-38 dispersed
Bpe11g01121 Bpe-Chr11:8371659 Bpe03g00874 Bpe-Chr3:28501935 2.63E-122 transposed
Bpe03g00874 Bpe-Chr3:28501935 Bpe09g00267 Bpe-Chr9:1962330 2.51E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g00402 BCT 2 279 BZR Transcription Factor Family AT1G75080 63.9 2.2e-84 309.3
Bpe04g00207 BCT 33 317 BZR Transcription Factor Family AT1G75080 63.6 1.6e-82 303.1
Bpe06g00056 . 19 296 BZR Transcription Factor Family AT1G75080 57.1 3.4e-77 285.4
Bpe10g00104 . 27 306 BZR Transcription Factor Family AT1G75080 55.4 3.4e-77 285.4
Bpe02g00402 BCT 2 277 BZR Transcription Factor Family AT1G19350 63.4 1.1e-85 313.5
Bpe04g00207 BCT 33 318 BZR Transcription Factor Family AT1G19350 60.6 1.9e-80 296.2
Bpe06g00056 . 19 295 BZR Transcription Factor Family AT1G19350 58.0 3.4e-77 285.4
Bpe10g00104 . 27 305 BZR Transcription Factor Family AT1G19350 57.4 3.7e-76 282.0
Bpe06g00056 . 1 297 BZR Transcription Factor Family AT3G50750 58.0 4.0e-76 281.6
Bpe10g00104 . 2 300 BZR Transcription Factor Family AT3G50750 56.1 9.8e-75 276.9
Bpe11g01121 . 77 327 BZR Transcription Factor Family AT4G18890 54.7 2.1e-53 205.7
Bpe03g00874 CCT 122 332 BZR Transcription Factor Family AT4G18890 50.7 2.3e-44 175.6
Bpe11g01121 . 1 327 BZR Transcription Factor Family AT1G78700 66.8 9.4e-109 390.2
Bpe03g00874 CCT 1 332 BZR Transcription Factor Family AT1G78700 66.4 6.7e-107 384.0
Bpe09g00267 CCT 1 312 BZR Transcription Factor Family AT1G78700 66.6 1.8e-96 349.4
Bpe10g00104 . 27 200 BZR Transcription Factor Family AT4G36780 75.7 3.5e-61 231.9
Bpe06g00056 . 19 196 BZR Transcription Factor Family AT4G36780 72.2 7.8e-61 230.7
Bpe04g00207 BCT 33 212 BZR Transcription Factor Family AT4G36780 55.7 1.6e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21128 PF05687 BES1_N 9.50E-59 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00874 Bpe_Chr03 FPKM 0.152482 0.0 0.873425 0.967658 0.028996 0.044314 0.186195 0.312845 0.414847 0.439703