Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00882 ATGGAAGATACGCAATCAGTTGCTAGTTTGATGGACTCTGCCACCTCGAAGATACAACAACTGCAGAAAGCATTTGCTGAACTTGAAAGTCATCGGGCGTTAACTCTTAACTTGAAATGGAAAGAACTTGAAGAGCATTTCCATGGACTTGAGAAATCCTTGAAGAGGCGTTTCCATGAGTTGGAAGACCAAGAGAAAGATTATGAAACGAAAACTATGGAGTCTCAAGAAATGTTAGGAAAGCGGGAAGCCGCTGTTGTGGCTAAAGAGGAGGCCTCCCTGGAGAAGCTTCAAGAGAGAAGAGATGCTGCTGTATTTGCCATTACTAATGTCAATGCTCAAGATAAGCACCAAAAATTATCAAGTCATGAAGCCACTGTTGTGACTGGGGACAGCCTTTGTGGGGAAACAAATGGGGTAGAGAAATCACCAGATTCTATGACTGCTGAAATTAATGTTGAATATGTAAAAGATTCTTCAGAGGATGGAAATTTTGGAGTAAAATCTTTTCCCCAGCTAGTAAAGCTATGTGAAGAAATGGATTCAAATGGGCTTCACAAATTTATATCTGATAACCGTAAAAACCTTGCTGCCATAAGAGAGGAAATTCCATTTGCTCTAAAAGCTGCCGTAAACCCTGCCCATTTAGTTCTGAATTCGTTGGAGGAATTCTACTGTGGGGAAGTTGTGAATCTGGAGGGAAAGAAGGATTCAAACCTGTTGGGTCTACGTCGAACTTGTATCATGTTGATGGAGTGTTTAAGCATTTACCTGACGAACCTTGATCTTGTGTCTGTATCTGATGTGATTTCAGAGGATGTTAAGGAACGAGCAAAAAGAATTTCTGAAGAATGGAAACCAAAGTTGGATGCTCTTGACATTGATGCTAGCAATGGGAACTCATTGGAAGCTCACGCCTTTTTGCAACTTCTGGAGACTTTTAAAATTTCGTCTGATTTTGGGGAAGAAGAATTGTCAAGGTTGATACCAATGGTCTCCCGCCGTCGTCAAACTGCAGACCTCTGCCGTTCCCTTGGGTTGGCAAAGAAAATGCCAGGTGTTATTGAAGTTCTAATAAGGAGTGGTCGGCAAATTGATGCTGTGAACCTCGCTTCTGCATTTGAACTTACTGAGCAGTTCCCTCTTGTTCCTTTACTGAAATCTTATTTAAAGGACGCAAAGAAAATTTCTTCACCAGTAAAACCAGGAAGTACATTTCCCATTGCACAGAATGAGGTAAATGAACGAGAACTTGCGGCTCTTAAGGCTGTGATGAAGTGCATTGAAGAGCACAAACTTGAGGACCAGTATGCTGTTGATCCACTCCAGAAGCGTTTGATTCAGATAGAGAAAGCCAAGGCAGAGAAGAAAAGGGTACCTGAGGCTGCAAGGCCTCAACCAAAAAGACCCCGTGCTAACAATGTCGCATTTGCCCCTCCTCTTCGTGTCGCTAATCCTGCTGCTGACAAGACAATGTATCCGAGGGTGACTGATAATAGGTACCAACAGTTCGTTTATGATAGACCACCTTACGCATACCCCGGACCTCCTACAGACAGTCATTGCCCATCATTTCTTGGCTCGGCTAGTTACAGTCACCCGGCTGCCCACAGCAATTATTTCGGAAACGGGTATCAGTACCAGGCTGCTTATCTCCACTAA 1662 43.2 MEDTQSVASLMDSATSKIQQLQKAFAELESHRALTLNLKWKELEEHFHGLEKSLKRRFHELEDQEKDYETKTMESQEMLGKREAAVVAKEEASLEKLQERRDAAVFAITNVNAQDKHQKLSSHEATVVTGDSLCGETNGVEKSPDSMTAEINVEYVKDSSEDGNFGVKSFPQLVKLCEEMDSNGLHKFISDNRKNLAAIREEIPFALKAAVNPAHLVLNSLEEFYCGEVVNLEGKKDSNLLGLRRTCIMLMECLSIYLTNLDLVSVSDVISEDVKERAKRISEEWKPKLDALDIDASNGNSLEAHAFLQLLETFKISSDFGEEELSRLIPMVSRRRQTADLCRSLGLAKKMPGVIEVLIRSGRQIDAVNLASAFELTEQFPLVPLLKSYLKDAKKISSPVKPGSTFPIAQNEVNERELAALKAVMKCIEEHKLEDQYAVDPLQKRLIQIEKAKAEKKRVPEAARPQPKRPRANNVAFAPPLRVANPAADKTMYPRVTDNRYQQFVYDRPPYAYPGPPTDSHCPSFLGSASYSHPAAHSNYFGNGYQYQAAYLH 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28584284 28587909 - Bpe012787.1 Bpe03g00882 101387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00882 553 Coils Coil 11 31 - -
Bpe03g00882 553 Pfam Frigida-like protein 169 458 IPR012474 -
Bpe03g00882 553 PANTHER FRIGIDA-LIKE PROTEIN 3 553 - -
Bpe03g00882 553 Coils Coil 51 71 - -
Bpe03g00882 553 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 3 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00882 - - - tcc:18612593 800.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00882 Bpe09g00274 CCT
Bpe03g00882 Bpe08g00996 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00882 Bpe-Chr3:28584284 Bpe11g00573 Bpe-Chr11:4391744 5.72E-50 dispersed
Bpe03g00882 Bpe-Chr3:28584284 Bpe09g00297 Bpe-Chr9:2380359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004474 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00882 Bpe_Chr03 FPKM 20.897142 23.088583 27.714617 27.560379 55.336765 52.732903 61.256142 44.493725 46.281635 52.27853