Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00897 ATGGGGCCGGGGGTGGCATTTTCCAGCGCAGAAAAGCAGGCGGAACGACTGAGAAAAGATGGCAACAATTGCTTCACAAAGGGTCGTCTTGGCGCTGCCATCGATGCCTATACGGAGGCAATCACATTATGCCCTACTGTTCCTGTTTATTGGACAAACAGAGCCATGTGCCATCGCAAGCGGAATGACTGGACGAAGGCGGAGGAGGATTGTAGGAGAGCAATTCAGCTAGATAACAGTTCCGTTAAGGCCCATTATATACTTGGACTAGCATTATTAAAGAAAGAAGAATATCCTGAAGGAATCAAGCAGTTAGAGAAGGCTTTGGAGGTCGGTAGAGGTGGAAACCGGAAGAGCTACATGGTAGAAGACATTTGGAAAGAACTTGCTAAAGCAAAGTATGCAGAGTGGGAACTAGCATCCACCTCGAAATCATGGGAATTGCAAAGCTTGAAGGAGACGTGTGAGACGGCCCTTGCACAAATGCATTTCTTAGAAAATTCTGAGACCGAAGGGTCCTTGAACGAAGCCTCTCTTTCCCATAGAAAACAATTAGAGGCTTTAGAGGCTGTATTTAGGAAAGCTTCTGAGGGCGATATTCCCACTGAGGTGCCGGATTATTTATGTTGTAAAATAACGCTCGATATTCTCCGTGATCCCGTCATTACTCCTAGCGGTGTTACATACGAGAGGGCAGTTATTATCGACCATATTCAAAAGGTGGGGAAGTTCGATCCAGTCACGAGGGAAGTACTTCACGAATCACAGCTCGTGCCGAACTTAGGTATTAAAGAAGCCGTGCAGGCTTTCCTAGATAAACACGGATGGGCATATCAGACAGATTGA 846 46.34 MGPGVAFSSAEKQAERLRKDGNNCFTKGRLGAAIDAYTEAITLCPTVPVYWTNRAMCHRKRNDWTKAEEDCRRAIQLDNSSVKAHYILGLALLKKEEYPEGIKQLEKALEVGRGGNRKSYMVEDIWKELAKAKYAEWELASTSKSWELQSLKETCETALAQMHFLENSETEGSLNEASLSHRKQLEALEAVFRKASEGDIPTEVPDYLCCKITLDILRDPVITPSGVTYERAVIIDHIQKVGKFDPVTREVLHESQLVPNLGIKEAVQAFLDKHGWAYQTD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28739419 28743303 + Bpe012802.2 Bpe03g00897 101402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00897 281 SUPERFAMILY RING/U-box 196 278 - -
Bpe03g00897 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Bpe03g00897 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 280 IPR045200 GO:0000209|GO:0061630
Bpe03g00897 281 PANTHER OS08G0113300 PROTEIN 8 280 - -
Bpe03g00897 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Bpe03g00897 281 Gene3D Tetratricopeptide repeat domain 6 144 IPR011990 GO:0005515
Bpe03g00897 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Bpe03g00897 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Bpe03g00897 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Bpe03g00897 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Bpe03g00897 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Bpe03g00897 281 Coils Coil 148 168 - -
Bpe03g00897 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 49 108 - -
Bpe03g00897 281 SUPERFAMILY TPR-like 11 111 IPR011990 GO:0005515
Bpe03g00897 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00897 Bpe-Chr3:28739419 Bpe06g00004 Bpe-Chr6:76505 1.94E-11 dispersed
Bpe03g00897 Bpe-Chr3:28739419 Bpe09g00301 Bpe-Chr9:2419241 1.66E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00897 K09561 - csv:101215457 445.662