Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe03g00906 | GGTTCTCCTCCCATGGCGTCCGGCGCTGGCTCTCCTTGCGGGGCCTGCAAGTTTCTGAGGCGAAAGTGCGCGGCTGATTGTATATTTGCGCCCTACTTTTGCTCGGAACAAGGGCCTGCTCAATTCGCTGCGATCCATAAAGTGTTTGGAGCGAGCAATGTTGCGAAGCTTTTGTTGCATGTTCCTGTTTCTGATCGGTCTGAGGCTGTTGTTACTATTTCTTATGAAGCTCAAGCTAGAATTAGAGATCCTGTTTATGGCTGTGTTTCTCATATCTTTGCCTTGCAACAGCAGGTTTCTTCTTCTTCTTCTTCTTCTATACCTAGTTTTTCATCTCTTTTTTATTTCTTCTCTTGA | 357 | 45.94 | GSPPMASGAGSPCGACKFLRRKCAADCIFAPYFCSEQGPAQFAAIHKVFGASNVAKLLLHVPVSDRSEAVVTISYEAQARIRDPVYGCVSHIFALQQQVSSSSSSSIPSFSSLFYFFS | 118 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 28789928 | 28790284 | + | Bpe012810.1 | Bpe03g00906 | 101411 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe03g00906 | 118 | ProSiteProfiles | LOB domain profile. | 11 | 113 | IPR004883 | - | |
Bpe03g00906 | 118 | Pfam | Lateral organ boundaries (LOB) domain | 12 | 102 | IPR004883 | - | |
Bpe03g00906 | 118 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 6 | 101 | - | - | |
Bpe03g00906 | 118 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 16 | 6 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g00906 | Bpe-Chr3:28789928 | Bpe06g00431 | Bpe-Chr6:15701204 | 2.97E-53 | dispersed | |
Bpe03g00906 | Bpe-Chr3:28789928 | Bpe09g00325 | Bpe-Chr9:2947529 | 1.61E-64 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21134 | PF03195 | LOB | 1.50E-36 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe03g00906 | K13944 | - | sind:105165639 | 186.037 |