Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00906 GGTTCTCCTCCCATGGCGTCCGGCGCTGGCTCTCCTTGCGGGGCCTGCAAGTTTCTGAGGCGAAAGTGCGCGGCTGATTGTATATTTGCGCCCTACTTTTGCTCGGAACAAGGGCCTGCTCAATTCGCTGCGATCCATAAAGTGTTTGGAGCGAGCAATGTTGCGAAGCTTTTGTTGCATGTTCCTGTTTCTGATCGGTCTGAGGCTGTTGTTACTATTTCTTATGAAGCTCAAGCTAGAATTAGAGATCCTGTTTATGGCTGTGTTTCTCATATCTTTGCCTTGCAACAGCAGGTTTCTTCTTCTTCTTCTTCTTCTATACCTAGTTTTTCATCTCTTTTTTATTTCTTCTCTTGA 357 45.94 GSPPMASGAGSPCGACKFLRRKCAADCIFAPYFCSEQGPAQFAAIHKVFGASNVAKLLLHVPVSDRSEAVVTISYEAQARIRDPVYGCVSHIFALQQQVSSSSSSSIPSFSSLFYFFS 118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28789928 28790284 + Bpe012810.1 Bpe03g00906 101411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00906 118 ProSiteProfiles LOB domain profile. 11 113 IPR004883 -
Bpe03g00906 118 Pfam Lateral organ boundaries (LOB) domain 12 102 IPR004883 -
Bpe03g00906 118 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 101 - -
Bpe03g00906 118 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 6 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00906 Bpe-Chr3:28789928 Bpe06g00431 Bpe-Chr6:15701204 2.97E-53 dispersed
Bpe03g00906 Bpe-Chr3:28789928 Bpe09g00325 Bpe-Chr9:2947529 1.61E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21134 PF03195 LOB 1.50E-36 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00906 K13944 - sind:105165639 186.037