Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00930 CCCACTATCATGGCTTGCAGTGTCGCCGACCTCCATTCCCTCTTGGGTGGCGCCGCCAACGCCGCTGCCGCTGCCGACTACATTTGCACGCAGTTTCAAGCAGTGTCCAACAAGTTTGTAGACACGAACTATGCTGTTGATAACACCTATCTCCTCTTCTCTGCTTACCTTGTTTTCGCCATGCAGCTCGGCTTTGCAATGCTGTGCGCAGGCTCCGTCAGAGCGAAGAACACCATGAACATTATGCTTACCAATGTACTCGACGCCGCAACTGGCGGTATTTTCTACTATCTGTTTGGATTTGCGTTGGCTTTCGGCACTCCATCGAATGGATTCATTGGGCAGCACTTTTTTGGGCTAAGTCAGTTTCCTTCTCCGTCATATGACTATGGCTTCTTTCTATTCCAGTGGGCGTTCGCCATTGCAGCTGCTGGGATCACCAGCGGTTCGATCGCAGAAAGAACACAGTTTGTTTCTTATTTGATCTATTCGTCTTTCTTGACCGGTCTGGTTTACCCGATTGTTGCTCACTGGTTCTGGTCAGCCGATGGATGGGGAAGCGCTGCTAGAGCTGATAACCTCCTGTTTGGTTCCGGGGTTATTGATTTTGCTGGCTCAGGTGTTGTTCACTTGGTCGGTGGCATTGCCGGCTTGTGGGGAACCTTCATTGAGGGCCCACGTATAGGTCGGTTTGACCACGGCGGAAAACCTGTGGCTCTACGTGGGCACAGTGGCACACTCGTCGTCCTCGGAACATTCCTTCTCTGGTTCGGTTGGTACGGTTTCAATCCAGGCTCATTCCTTAACATCTCAAAGGCTTATGGAGAAAGTGGTTCATATTATGGGCAGTGGAGCGCAGTTGGGAGAACCGCAGTGACGACTACCCTAGCCGGCTGCTCCGCCGCCCTCACCACTCTCTTCGGGAAACGGTTTATCTCAGGCCACTGGAACGTAACCGACGTTTGCAATGGCTTGCTCGGCGGATTTGCGGCCGTGACCGGTGGGTGCGCGGTGGTCGACCCGTGGGCTGCAGTCCTATGCGGTTTTGTGGCAGCTTGGGTGCTGATTGCATTCAACAAGCTGGCCGAGAAGCTCCAGTACGACGACCCGCTCGAAGCAGCTCAGCTCCACGGAGGGTGTGGAGCGTGGGGAATCATCTTCACTGGATTGTTTGCCAAAAAAGAGTACGTAAATGAGATCTATCCAAGTAACCCAAACAGACCATATGGGCTGTTCATGGGCGGCGGAGGAAGCCTACTGGCGGCGCATATCGTCCAGGTACTGGCGATCACCGGCTGGGTGAGCCTGACAATGGGGACGATGTTCTGGGTCCTGCACAAACTGAAGCTTTTGAGAATTACAGCTGAGGAAGAACTGGCAGGAATGGACCTGACCAGCCATGGAGGTTTAGCGTATGAATATTATGATGAGAGTAAAACCGAGCTCGTCCTTCGCGGAGCTCCCTCCACTGTTTAG 1476 53.25 PTIMACSVADLHSLLGGAANAAAAADYICTQFQAVSNKFVDTNYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYLFGFALAFGTPSNGFIGQHFFGLSQFPSPSYDYGFFLFQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSAARADNLLFGSGVIDFAGSGVVHLVGGIAGLWGTFIEGPRIGRFDHGGKPVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNISKAYGESGSYYGQWSAVGRTAVTTTLAGCSAALTTLFGKRFISGHWNVTDVCNGLLGGFAAVTGGCAVVDPWAAVLCGFVAAWVLIAFNKLAEKLQYDDPLEAAQLHGGCGAWGIIFTGLFAKKEYVNEIYPSNPNRPYGLFMGGGGSLLAAHIVQVLAITGWVSLTMGTMFWVLHKLKLLRITAEEELAGMDLTSHGGLAYEYYDESKTELVLRGAPSTV 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28966235 28967710 + Bpe012835.1 Bpe03g00930 101435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00930 491 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bpe03g00930 491 Gene3D Ammonium transporter AmtB like domains 24 487 IPR029020 -
Bpe03g00930 491 SUPERFAMILY Ammonium transporter 44 453 - -
Bpe03g00930 491 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bpe03g00930 491 PANTHER AMMONIUM TRANSPORTER 4 480 - -
Bpe03g00930 491 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bpe03g00930 491 PANTHER AMMONIUM TRANSPORTER 4 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00930 Bpe-Chr3:28966235 Bpe11g01296 Bpe-Chr11:9691859 0 dispersed
Bpe09g00407 Bpe-Chr9:6555778 Bpe03g00930 Bpe-Chr3:28966235 0 transposed
Bpe14g01289 Bpe-Chr14:9803296 Bpe03g00930 Bpe-Chr3:28966235 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00930 K03320 - jre:109020544 829.706