Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g00947 ATGGGTGGGGAAGGTGGCAAGGTATACCGTTTGAGTGAGGTAGCCTCCCACAACTCTAAAAACGACTGCTGGATTCTCGTCGACGGCAAGGTTTACGATGTGACGAAGTTTTTACACGATCATCCCGGCGGGGAGGAGGTATTGTTGTTAGCCACAGGAAAGGACGCAAGTGATGATTTTGCGGATGTGGGACACGGAAGCACAGCCTATGCGATAATGACTGATTACTACGTCGGAGACATCGACATATCGTCCATTCCAGCAAAGGTTAAGAGCATCCCTTCGGCCTTGCCGCCTCACGAAAAGCAGGGCCCGGCTGAAAGGCAGCATCCCATTTTGAAGCTCCTCCAATATCTACTTCCTCTCATTATTTTGGGACTGGCTTTTGGAGTTGGCTTCTATACTAAGAGTAGAGAATAA 420 49.29 MGGEGGKVYRLSEVASHNSKNDCWILVDGKVYDVTKFLHDHPGGEEVLLLATGKDASDDFADVGHGSTAYAIMTDYYVGDIDISSIPAKVKSIPSALPPHEKQGPAERQHPILKLLQYLLPLIILGLAFGVGFYTKSRE 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29081917 29082826 - Bpe012850.1 Bpe03g00947 101452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g00947 139 PANTHER - 1 136 - -
Bpe03g00947 139 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Bpe03g00947 139 SMART Cyt_b5_2 9 82 IPR001199 -
Bpe03g00947 139 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 7 89 IPR036400 -
Bpe03g00947 139 PRINTS Cytochrome B5 signature 56 63 IPR001199 -
Bpe03g00947 139 PRINTS Cytochrome B5 signature 41 55 IPR001199 -
Bpe03g00947 139 PRINTS Cytochrome B5 signature 31 41 IPR001199 -
Bpe03g00947 139 PRINTS Cytochrome B5 signature 69 81 IPR001199 -
Bpe03g00947 139 PANTHER CYTOCHROME B5 1 136 - -
Bpe03g00947 139 Gene3D - 4 86 IPR036400 -
Bpe03g00947 139 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 37 44 IPR018506 GO:0020037
Bpe03g00947 139 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 6 82 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g00947 K23490 CYB5; cytochrome b5 - egr:104456544 163.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00947 Bpe-Chr3:29081917 Bpe14g00841 Bpe-Chr14:6314134 6.92E-43 dispersed
Bpe03g00947 Bpe-Chr3:29081917 Bpe13g00852 Bpe-Chr13:14727354 2.35E-51 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G53560 69.4 1.5e-52 202.2
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G53560 68.7 3.3e-44 174.5
Bpe14g00928 . 1 137 NADPH P450 reductases AT5G53560 52.6 1.4e-37 152.5
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G48810 63.2 1.6e-49 192.2
Bpe03g00947 . 1 138 NADPH P450 reductases AT5G48810 57.0 9.5e-42 166.4
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G48810 61.5 4.7e-41 164.1
Bpe13g00852 . 22 133 NADPH P450 reductases AT2G32720 81.3 4.5e-49 190.7
Bpe14g00841 . 22 115 NADPH P450 reductases AT2G32720 79.8 2.5e-39 158.3
Bpe13g01364 . 1 128 NADPH P450 reductases AT1G26340 60.4 2.0e-41 165.2
Bpe04g01356 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 4.0e-132 467.6
Bpe03g01064 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 5.2e-132 467.2
Bpe08g00318 . 7 302 NADPH P450 reductases AT5G17770 68.6 5.8e-115 410.6
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G53560 69.4 1.5e-52 202.2
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G53560 68.7 3.3e-44 174.5
Bpe14g00928 . 1 137 NADPH P450 reductases AT5G53560 52.6 1.4e-37 152.5
Bpe13g00852 . 1 134 NADPH P450 reductases AT5G48810 63.2 1.6e-49 192.2
Bpe03g00947 . 1 138 NADPH P450 reductases AT5G48810 57.0 9.5e-42 166.4
Bpe14g00841 . 1 115 NADPH P450 reductases AT5G48810 61.5 4.7e-41 164.1
Bpe13g00852 . 22 133 NADPH P450 reductases AT2G32720 81.3 4.5e-49 190.7
Bpe14g00841 . 22 115 NADPH P450 reductases AT2G32720 79.8 2.5e-39 158.3
Bpe13g01364 . 1 128 NADPH P450 reductases AT1G26340 60.4 2.0e-41 165.2
Bpe04g01356 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 4.0e-132 467.6
Bpe03g01064 BCT 2 281 NADPH P450 reductases AT5G17770 80.7 5.2e-132 467.2
Bpe08g00318 . 7 302 NADPH P450 reductases AT5G17770 68.6 5.8e-115 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021203 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g00947 Bpe_Chr03 FPKM 0.0 0.0 0.0 0.0 1.270792 1.41233 1.386468 0.0 0.0 0.0