Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01003 ATGGCTTCCACCACCGCTGCCGCTGCCGCTGCTACCTCCTCGTTCATCGGAACTCGCCTCCCCAACGTCCGACCCAACGGGGGCCGGGTCCAAGCTCGATTCGGGTTCGGACGCAAAAAGAGCGCGCCTAAGAAAGTGACGAAGCGCGTTTCGGACCGCCCGCTTTGGTTCCCGGGAGCAGTAGCACCAGAATGGCTCGACGGCAGCTTGGTTGGTGATTATGGGTTCGACCCGTTTAACTTGGGAAAGCCAGCCGAGTACTTGCAGTTCGATTTGGATTCATTGGACCAGAATCTGGCGAAGAATGCGGCCGGGGACATCATCGGAACCCGGTTCGAGAGCGGGGATGTGAAGTCGACTCCATTCCAGCCGTACTCGGAGGTTTTTGGGTTGCAGAGGTTCCGTGAATGCGAGCTGATCCACGGAAGATGGGCGATGTTGGCCACTGTCGGCGCCCTCTCAGTCGAGTGGCTGACCGGAGTTACCTGGCAAGATGCCGGAAAGTCCACATATAATCTAGCTTTGTGTGCATTAAGATTCGAAAAAGCACGAATATTTATCATTAGATTTCAGGTAGAGCTGGTGGAAGGATCATCTTACCTTGGGCTACCACTTCCATTTTCGATTTCAACATTAATATGGATCGAAGTGCTCGTAATTGGATACATAGAGTTTCAGAGAAATGCAGAGCTTGACCCAGAGAAAAGGGTATATCCAGGAGGGAAATATTTCGACCCGCTCGGCTTGGCGTCCGACCCGGAGAAGAAGGCCACTCTGCAACTGGCTGAAATCAAGCACGCTCGGCTAGCCATGGTGGGTTTCCTTGGTTTTGCAGTCCAAGCTGCTGCGACGGGTAAAGGTCCTCTCAACAACTGGGCTACTCACTTGAGTGACCCTCTTCACACAACCATTATCGACACTTTTACCTCCTCTTGA 936 53.21 MASTTAAAAAATSSFIGTRLPNVRPNGGRVQARFGFGRKKSAPKKVTKRVSDRPLWFPGAVAPEWLDGSLVGDYGFDPFNLGKPAEYLQFDLDSLDQNLAKNAAGDIIGTRFESGDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATVGALSVEWLTGVTWQDAGKSTYNLALCALRFEKARIFIIRFQVELVEGSSYLGLPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRVYPGGKYFDPLGLASDPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFTSS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29538794 29539745 - Bpe012909.1 Bpe03g01003 101508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01003 311 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 168 IPR001344 GO:0009765|GO:0016020
Bpe03g01003 311 Pfam Chlorophyll A-B binding protein 62 281 IPR022796 -
Bpe03g01003 311 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 191 310 - -
Bpe03g01003 311 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.2, CHLOROPLASTIC 1 168 - -
Bpe03g01003 311 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 191 310 IPR001344 GO:0009765|GO:0016020
Bpe03g01003 311 SUPERFAMILY Chlorophyll a-b binding protein 47 310 - -
Bpe03g01003 311 Gene3D Chlorophyll a/b binding protein domain 56 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00914 Bpe-Chr2:7768174 Bpe03g01003 Bpe-Chr3:29538794 0 dispersed
Bpe03g01003 Bpe-Chr3:29538794 Bpe04g01879 Bpe-Chr4:23879251 9.20E-40 dispersed
Bpe03g01003 Bpe-Chr3:29538794 Bpe15g01065 Bpe-Chr15:19919108 9.47E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01003 K08915 - egr:104426378 505.368