Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01015 ATGCTTGCTTCCATGGACTTAAATGCGTCTCCAGTACCTGAAGAGGACGAGGAAAATTATGAGAGGCGTGTAGAAGAATATAGTGCGCCGGAAGACCGGGTAGAAACTGCAGTTGATATAGCACGCAGGGAGCGAGACGAAAGACGTAAAAAGTTAAAACGAGAACGCCCAGATGAGAAACCAATGCATGTATCTCAACCATATGTTTGTGATTCGTTTTATCAAATGAAAAGCCTGAAGTCTCATGATAGAAACAGACTTCCTCCAGGGTGGTTGGATTGTCCTCCATATGGTAGTGAAATATCTTTCATTATTCCTTCTAAGGTTCCACTTGATGAAACTTTCAATGACCAGATAGCTCCGGGTAAAAGATACTCCTTTAAGCAAGTGATTCATCAACAAAGACTTGGTTTGGTGATAGATCTGACAAATACTTCTCGTTACTACACAACAGTAGAATTGAAGAAAGAGGGTATCAAGCATGTTAAGATCCCATGCAAAGGAAGGGATTCTGTACCTGACAATGCCTCAGTTAATCAATTTGTCTATGAGGTCATTCAATTTTTTTTCCGCCAAAAACAGTCAAAGAAGTATATCCTTGTACATTGCACTCATGGGCATAATCGAACAGGATATATGATTATTCATTATCTTATGCGCTCTATGTCTGTTTCTGTCGCTCAGGCAATAAAAGTATTTTCAGATGCTCGCCCTCCTGGAATCTACAAGCCTGACTATATAGATGCGCTGTATGCCTTTTATCATGAAAGAAAGCCTGAAGTAGTTGTCTGTCCCCAAACACCTGAGTGGAAAAGATCCTCTGAGCTTGATCTTAATGGTGAAGCATTGCCAGACGATGATGATGATGGAGTTTCTGCTGCTCCTTTTCATGATAATGATGATCATGTGGTGATGACAAATGATGATGTTTTGGGAGATGAAATACCTAGGGAGCAACAAGATGCCTTTCGACTCTTCTGCTATCAAATGCTTAAGTTGGGTGTTGGGGCAAGAGGAAATTCTCAATTTCCTGGGTCACACCCAGTTTCTCTCAACAGGGATAATTTACAATTGTTAAGGCAGCGTTATTATTATGCCACATGGAAAGCTGATGGAACGCGATATATGATGCTAATTACTATGGATGGGTGTTACTTGGTTGATAGGAATTTCAATTTCCGCAGGGTGCAAATGAGGTTTCCCTGCAGAAACATAAATGATGGTCTTGTAGAGAGGGCTCATCATTATACATTGCTTGATGGAGAGATGATAATTGATACTGTGCCAGGCACACAGAAGCAAGAGAGAAGATATCTTATCTATGATCTCATGGCAATTAACAACATCTCTGTTATTGAGCGACCTTTCTATGAAAGATGGAAAATGCTCGAGAAGGAAGTGATTGAACTTCGTAACTCTGAGCGCCAGAAGATTTACCATTACAGATATGATCTGGAGCCATTCAGGGTAAGGAGGAAAGATTTTTGGTTGCTCTCTGCTGTTAACAAGGTTCTAAAGGAATTCATTCCGAAGCTTTCACATGAAGCAGATGGACTAATTTTCCAGGGTTGGGATGATCCCTATATTCCTCGCACACACGAAGGGCTTTTGAAATGGAAGTATGCCCAATTGAACTCCGTTGACTTCCTATTTGAGATGGTTGACGAGGAGAGCCAGCATCTTTTTCTCTATGAACGAGGAAAGAAGAAACTTATGGAAGGGAATAGAGTTGTATTTAGAGATGGTTCAGATCCCTCTTTTTATTCTGGGAAGATAATAGAGTGCACTTGGGATTCTGACCAACAGCAATGGGACTGTATGCGAATCAGGACCGATAAATCAACTCCAAATGATTTCAATACATATAAAAAGGTTGTGATGCGAAGCATAAGAGACAATATCACTGAGGATATCTTGTTGAATGAGATTGATGAGATTATTCGTCTGCCCATGTATGCTGACAGGATAAAGATTGATAGTAAAGCACACCAGCACATAAATCGTCGGAGATGA 2013 40.54 MLASMDLNASPVPEEDEENYERRVEEYSAPEDRVETAVDIARRERDERRKKLKRERPDEKPMHVSQPYVCDSFYQMKSLKSHDRNRLPPGWLDCPPYGSEISFIIPSKVPLDETFNDQIAPGKRYSFKQVIHQQRLGLVIDLTNTSRYYTTVELKKEGIKHVKIPCKGRDSVPDNASVNQFVYEVIQFFFRQKQSKKYILVHCTHGHNRTGYMIIHYLMRSMSVSVAQAIKVFSDARPPGIYKPDYIDALYAFYHERKPEVVVCPQTPEWKRSSELDLNGEALPDDDDDGVSAAPFHDNDDHVVMTNDDVLGDEIPREQQDAFRLFCYQMLKLGVGARGNSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLVDRNFNFRRVQMRFPCRNINDGLVERAHHYTLLDGEMIIDTVPGTQKQERRYLIYDLMAINNISVIERPFYERWKMLEKEVIELRNSERQKIYHYRYDLEPFRVRRKDFWLLSAVNKVLKEFIPKLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAQLNSVDFLFEMVDEESQHLFLYERGKKKLMEGNRVVFRDGSDPSFYSGKIIECTWDSDQQQWDCMRIRTDKSTPNDFNTYKKVVMRSIRDNITEDILLNEIDEIIRLPMYADRIKIDSKAHQHINRRR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29596777 29603543 - Bpe012920.1 Bpe03g01015 101520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01015 670 SUPERFAMILY Nucleic acid-binding proteins 543 656 IPR012340 -
Bpe03g01015 670 ProSiteProfiles Dual specificity protein phosphatase domain profile. 105 260 IPR020422 GO:0006470|GO:0008138
Bpe03g01015 670 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 271 IPR029021 -
Bpe03g01015 670 CDD Adenylation_mRNA_capping 318 541 IPR001339 GO:0004484|GO:0005524|GO:0006370
Bpe03g01015 670 PIRSF mRNA_capping_HCE 73 670 IPR017074 GO:0004484|GO:0006370|GO:0140818
Bpe03g01015 670 Pfam mRNA capping enzyme, C-terminal domain 545 639 IPR013846 -
Bpe03g01015 670 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 179 248 IPR000387 GO:0016311|GO:0016791
Bpe03g01015 670 PANTHER MRNA-CAPPING ENZYME 3 669 - -
Bpe03g01015 670 ProSiteProfiles ATP-dependent DNA ligase family profile. 438 569 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bpe03g01015 670 CDD RNA_5'-triphosphatase 90 251 - -
Bpe03g01015 670 Pfam mRNA capping enzyme, catalytic domain 347 540 IPR001339 GO:0004484|GO:0005524|GO:0006370
Bpe03g01015 670 Gene3D Protein tyrosine phosphatase superfamily 83 290 IPR029021 -
Bpe03g01015 670 Pfam Dual specificity phosphatase, catalytic domain 128 254 IPR000340 GO:0008138|GO:0016311
Bpe03g01015 670 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 669 - -
Bpe03g01015 670 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 307 541 - -
Bpe03g01015 670 SMART dsp_5 110 256 IPR020422 GO:0006470|GO:0008138
Bpe03g01015 670 Gene3D DNA ligase/mRNA capping enzyme 299 540 - -
Bpe03g01015 670 Gene3D - 541 634 IPR012340 -
Bpe03g01015 670 MobiDBLite consensus disorder prediction 1 63 - -
Bpe03g01015 670 ProSitePatterns Tyrosine specific protein phosphatases active site. 201 211 IPR016130 GO:0016311|GO:0016791
Bpe03g01015 670 MobiDBLite consensus disorder prediction 15 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01015 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] - qsu:112006691 1046.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe12g00460 . 73 934 Protein tyrosine phosphatase (PTP) family AT5G23720 61.5 7.8e-294 1006.5
Bpe04g01185 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.6 2.3e-42 168.7
Bpe15g00162 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 2.5e-71 265.0
Bpe15g01037 . 44 322 Protein tyrosine phosphatase (PTP) family AT3G52180 69.9 1.2e-115 412.9
Bpe15g01203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 70.8 1.8e-111 399.1
Bpe02g01492 . 137 541 Protein tyrosine phosphatase (PTP) family AT3G01510 69.3 2.2e-177 618.6
Bpe14g00621 CCT 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 55.9 1.2e-69 260.0
Bpe12g00275 BCT,CCT 3 228 Protein tyrosine phosphatase (PTP) family AT2G32960 56.4 3.7e-68 255.0
Bpe15g00169 BCT,CCT 34 189 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 1.1e-64 243.4
Bpe14g00022 . 17 164 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 3.5e-50 195.3
Bpe11g00633 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 57.1 3.7e-100 361.7
Bpe02g02223 . 6 273 Protein tyrosine phosphatase (PTP) family AT2G35680 53.9 5.2e-78 288.1
Bpe14g00621 CCT 47 211 Protein tyrosine phosphatase (PTP) family AT4G03960 73.3 6.0e-74 273.9
Bpe15g00169 BCT,CCT 22 189 Protein tyrosine phosphatase (PTP) family AT4G03960 68.5 2.4e-67 251.9
Bpe12g00275 BCT,CCT 39 228 Protein tyrosine phosphatase (PTP) family AT4G03960 59.4 6.6e-65 243.8
Bpe14g00022 . 13 168 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.4e-53 204.9
Bpe14g00022 . 4 203 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.5e-83 305.1
Bpe15g00169 BCT,CCT 28 189 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.8e-57 219.2
Bpe14g00621 CCT 34 205 Protein tyrosine phosphatase (PTP) family AT3G02800 59.3 2.6e-56 215.3
Bpe12g00275 BCT,CCT 58 220 Protein tyrosine phosphatase (PTP) family AT3G02800 61.3 8.3e-55 210.3
Bpe04g01698 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.7 2.7e-61 233.8
Bpe14g00158 . 1 427 Protein tyrosine phosphatase (PTP) family AT5G39400 62.3 1.6e-150 529.3
Bpe12g00294 . 32 605 Protein tyrosine phosphatase (PTP) family AT3G19420 68.8 1.4e-230 795.8
Bpe15g00128 . 34 620 Protein tyrosine phosphatase (PTP) family AT3G19420 65.5 4.1e-214 741.1
Bpe12g00294 . 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.6 5.4e-185 644.4
Bpe15g00128 . 42 471 Protein tyrosine phosphatase (PTP) family AT3G50110 69.3 8.9e-172 600.5
Bpe04g01654 . 4 848 Protein tyrosine phosphatase (PTP) family AT3G10550 68.0 0.0e+00 1152.5
Bpe04g01654 . 6 850 Protein tyrosine phosphatase (PTP) family AT5G04540 64.5 0.0e+00 1081.6
Bpe11g00849 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 56.1 1.6e-74 276.2
Bpe07g00217 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.7 1.2e-110 396.4
Bpe03g01015 . 1 662 Protein tyrosine phosphatase (PTP) family AT3G09100 69.7 4.1e-284 973.8
Bpe03g01015 . 5 662 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 7.6e-259 889.8
Bpe03g01015 . 87 669 Protein tyrosine phosphatase (PTP) family AT5G28210 57.5 7.6e-184 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g01015 Bpe_Chr03 FPKM 3.1398 3.103668 2.446116 2.588916 5.201206 5.383507 5.568689 4.072848 3.293761 3.95486