Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01022 ATGTCCCACATTGATCTGGAATCCGGCGAGCATCTTCGGTCGGTAACGGGAAGTGACATAAGCGTCGAGGATAGCGTCTGTTTCTCCGATGCCGAAGAGGGTTCCTGCTATTCTCAGTTCTTTTCGACGAACGGTGGCTCTTACGATGAGTACAGGTTCGCCTTCGTTTCCGAACCCAAAGCCGGGATCGTTATGGACTCTCGAAGAGCTTCATCGGCGTCGGATTCTTCCGTGGAGGTCGAAATTGAAAGTGGGATACCGGAGATGAAGGTGCATTTGGCTAAAGTAGAAAGAGATTGCAGAATTTGTCATTTGGGTTTGGAGAGTAATAGCCGTGAGTCTGGTGTTCCGATTGAATTGGGTTGTTCTTGCAAGGATGACTTGGCTGCTGCTCATAAGCACTGCGCTGAGACCTGGTTCAAAATTAAAGGAAATAAGACCTGCGAGATTTGTCATTCTATTGCTCGGAATGTGGTTGGAGCTCACGAGATTGAGGTGGTGGAGCAAAGCACCGAGACCGGCAATGCCTCGTCGACTGCACCAGCGCCTACTGCAGAGACCCAAAGCTTCTGGCGTGGACATAGGTTCCTGAATTTTCTACTTGCTTGTATGGTTTTTGCATTTGTAATTTCATGGCTCTTCCACTTCAATGTTTCATCATGA 663 48.42 MSHIDLESGEHLRSVTGSDISVEDSVCFSDAEEGSCYSQFFSTNGGSYDEYRFAFVSEPKAGIVMDSRRASSASDSSVEVEIESGIPEMKVHLAKVERDCRICHLGLESNSRESGVPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNVVGAHEIEVVEQSTETGNASSTAPAPTAETQSFWRGHRFLNFLLACMVFAFVISWLFHFNVSS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29632886 29633940 + Bpe012927.1 Bpe03g01022 101527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01022 220 Pfam RING-variant domain 100 151 IPR011016 GO:0008270
Bpe03g01022 220 CDD RING_CH-C4HC3_MARCH 100 152 - -
Bpe03g01022 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 160 IPR013083 -
Bpe03g01022 220 SUPERFAMILY RING/U-box 97 154 - -
Bpe03g01022 220 SMART ringv_2 99 152 IPR011016 GO:0008270
Bpe03g01022 220 PANTHER ZINC FINGER, RING-CH-TYPE 2 220 - -
Bpe03g01022 220 ProSiteProfiles Zinc finger RING-CH-type profile. 92 158 IPR011016 GO:0008270
Bpe03g01022 220 PANTHER OS01G0850200 PROTEIN 2 220 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01022 Bpe04g01820 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01022 Bpe-Chr3:29632886 Bpe08g00153 Bpe-Chr8:832211 3.34E-11 dispersed
Bpe01g00786 Bpe-Chr1:8273471 Bpe03g01022 Bpe-Chr3:29632886 9.11E-31 transposed
Bpe07g00540 Bpe-Chr7:11734378 Bpe03g01022 Bpe-Chr3:29632886 2.62E-23 transposed
Bpe15g01136 Bpe-Chr15:20375473 Bpe03g01022 Bpe-Chr3:29632886 2.37E-63 wgd
Bpe03g01022 Bpe-Chr3:29632886 Bpe04g01820 Bpe-Chr4:23559370 1.10E-63 wgd
Bpe03g01022 Bpe-Chr3:29632886 Bpe04g01242 Bpe-Chr4:18140326 9.87E-121 wgd
Bpe03g01022 Bpe-Chr3:29632886 Bpe08g01389 Bpe-Chr8:14847294 4.86E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01022 - - csv:101218915 343.584