Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01028 ATGGGGCGTGGTTTTGTTACTGTGAAGGCTCAAATGACGACGGATGAGAAGAAGATTTCGGACGATAGAATGCTCGTATATGTGCCTCCTCATCCATTGATCAAGCACTGGGTTTCAGTATTGAGAAATGAACAGACTCCCTGCGCTATTTTCAGAAGCGCCATGGGAGAACTGGGAAGACTACTTATGTATGAAGCCTCAAGGGATTGGCTTCCTATTGTGGCAGGAGAGATTCAATCTCCAATGGGTGTTGCCTCAGTTGAATTTATTGATCCTAGAGAGCCTGTGGCTGTTGTTCCGATCCTTCGAGCTGGCCTAGCTCTTGTTGAGCATGCATCATCCATCTTGCCTGCAATAAAAACTTATCATTTAGGGGTTAGTAGAGACGAGGAGACACTTCAACCGACAATATATCTTAACAAATCTTATGGCAGGTTGCCTGAAAGTTTTCCAGAAGGATCTCGAGTGTTTGTGGTTGACCCCATGCTGGCTACAGGCAGCACAATAGTCGCAGCACTTGATCTTTTAAAGGAACGCGGGGTGGGAAACAAGCAAATTAAAGTGATATCTGCTGTAGCTGCCCCTCCAGCCCTTCAAAAGTTAAGCGAAAAATTTCCGGGACTTCATGTATACACTGGAATTATCGATCCCACAGTTAATGAGAAAGGGTTTATAATTCCTGGACTTGGAGATGCTGGCGACCGTAGCTTTGGAACGTGA 720 45.42 MGRGFVTVKAQMTTDEKKISDDRMLVYVPPHPLIKHWVSVLRNEQTPCAIFRSAMGELGRLLMYEASRDWLPIVAGEIQSPMGVASVEFIDPREPVAVVPILRAGLALVEHASSILPAIKTYHLGVSRDEETLQPTIYLNKSYGRLPESFPEGSRVFVVDPMLATGSTIVAALDLLKERGVGNKQIKVISAVAAPPALQKLSEKFPGLHVYTGIIDPTVNEKGFIIPGLGDAGDRSFGT 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29673035 29675234 - Bpe012933.1 Bpe03g01028 101533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01028 239 PANTHER URIDINE KINASE 11 235 - -
Bpe03g01028 239 Pfam Uracil phosphoribosyltransferase 28 239 - -
Bpe03g01028 239 Gene3D - 13 239 IPR029057 -
Bpe03g01028 239 TIGRFAM upp: uracil phosphoribosyltransferase 26 239 IPR005765 GO:0004845|GO:0006223
Bpe03g01028 239 SUPERFAMILY PRTase-like 26 238 IPR029057 -
Bpe03g01028 239 CDD PRTases_typeI 91 215 IPR000836 -
Bpe03g01028 239 PANTHER URACIL PHOSPHORIBOSYLTRANSFERASE-LIKE 11 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01028 K00761 upp, UPRT; uracil phosphoribosyltransferase [EC:2.4.2.9] - cit:102620885 409.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01028 Bpe-Chr3:29673035 Bpe14g00215 Bpe-Chr14:2387668 4.08E-19 dispersed
Bpe03g01028 Bpe-Chr3:29673035 Bpe08g01082 Bpe-Chr8:12931670 7.21E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g796 . . . . . Bpe03g01028 . . . . Cma03g00404 . Car03g00353 . Sed14g0515 Cpe10g00910 . Bhi03g02043 Tan03g0913 Cmetu08g1944 . . . . Cla04g00768 Cam04g0797 Cec04g0921 Cco04g0972 Clacu04g0832 Cmu04g0825 Cre04g0882 . . Cone13ag1356 Cone19ag1352 Lsi01g01465 Csa04g01535 Chy08g00711 . Blo07g01168 . . Bda05g00954 . . . . . Cmo03g00417 . . . . . . . . . . . . . . . . . . . . . . . . Cme08g02442
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe05g00303 . 80 558 PRT Gene Family AT2G16570 85.0 2.2e-238 821.6
Bpe05g00303 . 80 558 PRT Gene Family AT4G34740 85.4 5.7e-239 823.5
Bpe05g00303 . 80 531 PRT Gene Family AT4G38880 75.1 2.4e-194 675.2
Bpe05g00045 . 4 179 PRT Gene Family AT1G27450 81.3 3.7e-78 287.7
Bpe07g00164 . 1 180 PRT Gene Family AT1G27450 75.0 3.8e-75 277.7
Bpe05g00590 . 7 181 PRT Gene Family AT1G27450 73.1 2.6e-71 265.0
Bpe14g00584 CCT,ECH 11 183 PRT Gene Family AT1G27450 71.7 4.1e-69 257.7
Bpe02g01252 CCT,ECH 11 153 PRT Gene Family AT1G27450 54.3 1.1e-45 179.9
Bpe14g00584 CCT,ECH 33 188 PRT Gene Family AT1G80050 75.0 2.0e-64 241.9
Bpe07g00164 . 30 180 PRT Gene Family AT1G80050 75.5 8.6e-63 236.5
Bpe05g00590 . 30 180 PRT Gene Family AT1G80050 76.2 2.5e-62 235.0
Bpe05g00045 . 27 176 PRT Gene Family AT1G80050 69.3 2.0e-56 215.3
Bpe02g01252 CCT,ECH 33 158 PRT Gene Family AT1G80050 58.3 1.4e-44 176.0
Bpe07g00164 . 1 97 PRT Gene Family AT4G22570 83.7 1.3e-43 172.2
Bpe05g00590 . 5 97 PRT Gene Family AT4G22570 81.7 5.5e-42 166.8
Bpe05g00045 . 4 94 PRT Gene Family AT4G22570 79.1 5.3e-37 150.2
Bpe07g00164 . 1 96 PRT Gene Family AT4G12440 83.3 3.3e-41 164.1
Bpe05g00590 . 1 96 PRT Gene Family AT4G12440 80.2 3.0e-39 157.5
Bpe14g00584 CCT,ECH 1 148 PRT Gene Family AT5G11160 85.1 4.6e-67 250.8
Bpe07g00164 . 8 145 PRT Gene Family AT5G11160 73.9 5.8e-54 207.2
Bpe05g00590 . 8 145 PRT Gene Family AT5G11160 72.5 3.8e-53 204.5
Bpe05g00045 . 5 142 PRT Gene Family AT5G11160 70.3 6.4e-53 203.8
Bpe02g01252 CCT,ECH 1 118 PRT Gene Family AT5G11160 62.8 8.7e-42 166.8
Bpe02g01097 . 1 186 PRT Gene Family AT1G71750 60.4 1.5e-61 232.6
Bpe11g00604 . 28 482 PRT Gene Family AT1G55810 83.1 3.7e-220 760.8
Bpe08g01082 . 739 1125 PRT Gene Family AT1G55810 83.7 8.8e-190 659.8
Bpe14g00215 . 19 525 PRT Gene Family AT1G55810 66.3 1.7e-188 655.6
Bpe11g00604 . 79 487 PRT Gene Family AT3G27440 74.1 5.5e-178 620.5
Bpe14g00215 . 81 525 PRT Gene Family AT3G27440 68.1 1.1e-170 596.3
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27440 72.6 1.2e-164 576.2
Bpe14g00215 . 1 525 PRT Gene Family AT3G27190 78.5 1.4e-233 805.4
Bpe11g00604 . 14 481 PRT Gene Family AT3G27190 73.1 9.7e-203 703.0
Bpe08g01082 . 739 1125 PRT Gene Family AT3G27190 77.3 5.4e-177 617.5
Bpe03g01028 . 1 239 PRT Gene Family AT3G53900 73.3 4.2e-100 361.3
Bpe11g00604 . 13 482 PRT Gene Family AT4G26510 82.7 2.9e-228 787.7
Bpe14g00215 . 11 525 PRT Gene Family AT4G26510 69.5 1.4e-201 699.1
Bpe08g01082 . 739 1125 PRT Gene Family AT4G26510 84.2 1.3e-191 666.0
Bpe14g00215 . 1 525 PRT Gene Family AT5G40870 79.8 1.4e-238 822.0
Bpe11g00604 . 14 484 PRT Gene Family AT5G40870 73.1 1.2e-203 706.1
Bpe08g01082 . 739 1125 PRT Gene Family AT5G40870 76.7 4.6e-176 614.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005664 1 4 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g01028 Bpe_Chr03 FPKM 14.427083 17.139769 28.230082 29.356443 34.525177 36.062557 37.897243 32.889778 33.572803 34.553925