Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01040 ATGGTTTTCTCCTCCATACCAGTTTATCCTGATCCATCCAACTGGCAGCAGCGGCAAGTAATCAATCAAATCGGAAGTAGTTCCAGACCTAGCTCTCAACTTCTTCATCCAGAACCAACTCCTCATCCACCACTTCAGAACACTCATGGCGGTGCTACCTCCGGATCCGTCCGCCCAGGTTCCATGTCAGAGCGTGCTCGATTTGCTAACATACCCCTACCGGAAGCAGCCCTAAAATGCCCACGATGCGAATCTACAAACACAAAATTTTGCTATTTCAACAATTACAGTCTTACCCAGCCTCGCCATTTTTGTAAGACCTGTAGAAGGTACTGGACCAAAGGAGGTGCTCTCAGAAGCGTCCCAGTTGGCGGGGGATGTCGACGGAATAAAAAAAGGAAAGGAAGTAGCTCGAAATCGCCCATCAGTTCCGACCAACAAACCGGCGGCAGTGGTTCATCGAGTATGATTCCGTCTAGCAGTGGACACACTGATATACTAAGCATGGGCCCACACATGCCCCCTCTAAGATTTATGGCTCCTCTTCATAACCTCAACGAGTTTGCATCCGGTGAGGTCGGATTAAACTATGGCCTCAATTACAGCACTGTTTCTGCACCGACAAGCGACCTAAACTTTCAACCTGGAGTTGCTCTGGGAAGCGGTGGAGCAGCTGGGTCTCTTTTAGGTCTAGATCAGCAATGGCGGATACAGCAAATGCCGCAGTTTCCTTTTCTATCCGGTTTCGACCCATCGACGTCGCTGTTTGAAAGGCCGTCGGCTTTGGGAATTACACAGTTTCCATCAGTGAAAATGGAAGAAAGCCAGCAAGATCAAGGGCTTAATTTGGGAAGACAGTTCCTCGGATCAGTTGCAGGAAATGAACAATACTGGAGTGGTACTAATCCTTGGTCGGATCTTTCTGGTTTCAGCTCTTCTTCTACGACCAGTAATCCTCTT 960 48.54 MVFSSIPVYPDPSNWQQRQVINQIGSSSRPSSQLLHPEPTPHPPLQNTHGGATSGSVRPGSMSERARFANIPLPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTKGGALRSVPVGGGCRRNKKRKGSSSKSPISSDQQTGGSGSSSMIPSSSGHTDILSMGPHMPPLRFMAPLHNLNEFASGEVGLNYGLNYSTVSAPTSDLNFQPGVALGSGGAAGSLLGLDQQWRIQQMPQFPFLSGFDPSTSLFERPSALGITQFPSVKMEESQQDQGLNLGRQFLGSVAGNEQYWSGTNPWSDLSGFSSSSTTSNPL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29734000 29735119 - Bpe025411 Bpe03g01040 101545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01040 320 Pfam Dof domain, zinc finger 77 132 IPR003851 GO:0003677|GO:0006355
Bpe03g01040 320 MobiDBLite consensus disorder prediction 137 166 - -
Bpe03g01040 320 MobiDBLite consensus disorder prediction 122 168 - -
Bpe03g01040 320 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Bpe03g01040 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 316 IPR045174 GO:0003700|GO:0006355
Bpe03g01040 320 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 316 - -
Bpe03g01040 320 MobiDBLite consensus disorder prediction 26 61 - -
Bpe03g01040 320 MobiDBLite consensus disorder prediction 46 60 - -
Bpe03g01040 320 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00687 Bpe03g01040 CCT
Bpe02g00845 Bpe03g01040 CCT
Bpe02g00687 Bpe03g01040 ECH
Bpe02g00845 Bpe03g01040 ECH
Bpe03g01040 Bpe04g01330 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01040 Bpe-Chr3:29734000 Bpe10g00044 Bpe-Chr10:647821 1.38E-35 dispersed
Bpe15g01111 Bpe-Chr15:20233028 Bpe03g01040 Bpe-Chr3:29734000 4.21E-73 wgd
Bpe02g00845 Bpe-Chr2:6257405 Bpe03g01040 Bpe-Chr3:29734000 8.80E-69 wgd
Bpe03g01040 Bpe-Chr3:29734000 Bpe04g01330 Bpe-Chr4:19894303 4.34E-150 wgd
Bpe03g01040 Bpe-Chr3:29734000 Bpe08g01366 Bpe-Chr8:14735050 8.45E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21143 PF02701 zf-Dof 6.80E-32 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01040 - - jre:109006759 322.013