Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01106 ATGGCCGACTACGACCTTACCCAACGTATCGCTCCCAATCTCGATCGTCACCTCGTGTTCCCGCTGCTTGAATTTCTCCAGGAGCGGCAGCTTCACCCCGATGAGCAGATCCTCAAGTCTAAAATCGAGCTTCTCAATAAGACCAACATGGTCGACTACGCCATGGATATTCACAAGTCGCTTTACCATTCCGAAGAAGTGCCTCAGGATATGGTGGAGAGGAGAGCTGAGGTGGTTGCTCGGCTTAAGGCTTTGGAAGAAGGTGCGGCGCCTATTGTTGCTTTTCTTCAGAATGCCTCTGCGGTTCAGGAGTTGAGGGCTGATAAGCATTATAATATTCAGATGCTTAATGATCGTTATCAGATAGGTCCGAACCAGATTGAGGCGCTGTATCAATATGCTAAGTTTCAGTTTGAGTGTGGAAACTACTCTGGAGCTGCAGATTATTTGTATCACTACAGGGCCTTGTGCACAAATAGCGAAAGGAGTTTGAGTGCATTATGGGGAAAGCTGGCTGCAGAAATATTGATGCAGAATTGGGACATTGCTCTGGAAGAACTTAATCAATTGAAAGAAATTATTGACTCAAAGAGTTTTCAATCACCAATGAGTCAGGTCCAAAGCCGGATATGGCTAATGCATTGGAGTCTGTTCATCTTTTTTAATCATGATAATGGAAGAACACAGATTATTGACCTATTTAATCAAGACAAGTATTTAAATGCCATTCAAACTAATGCTCCCCATCTGTTACGCTACCTGGCCACTGCATTCATTGTGAACAAGAGGAGGAGACCTCAGTTCAAAGATTTTATAAAGGTTATGCAACCGGACCAGTGCTCGTACAAGGACCCTATCACAGAGTTCTTAGCTTGTATGTATGTCAGTTATGATTTTGATGGCGCACAAAAGAAAATGAAAGAGTGCGAGGAAGTGATATTGAATGATCCATTTCTTGGTAAACGAGTAGAAGATGGAAACTATTCAACTGTTCCATTGAGAGATGAGTTTCTAGAGAATGCACGTTTATTCATCTTTGAGATGTATTGCCAAATACATCGGCGGATAGAAATGAGTGTTCTTGCTGAGAAATTGAACTTGAATTATGAGGATGCTGAGAGATGGATTGCAAATCTTATCCGAGGCTCAAAGCTCGACGCCAGGATTGATTCAAAGTCAGGAACTGTCATCATGGAACCCAACCATCCAAGTGTGTATGAGCAGCTGATAGACCACACCAAGGCATTATCAGGGCGAACTTACAAGTTAGTCAGTCAGCTTCTAGAGCATTCCCAGACTCAGGCAGCTCGA 1311 43.25 MADYDLTQRIAPNLDRHLVFPLLEFLQERQLHPDEQILKSKIELLNKTNMVDYAMDIHKSLYHSEEVPQDMVERRAEVVARLKALEEGAAPIVAFLQNASAVQELRADKHYNIQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADYLYHYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNQLKEIIDSKSFQSPMSQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVNKRRRPQFKDFIKVMQPDQCSYKDPITEFLACMYVSYDFDGAQKKMKECEEVILNDPFLGKRVEDGNYSTVPLRDEFLENARLFIFEMYCQIHRRIEMSVLAEKLNLNYEDAERWIANLIRGSKLDARIDSKSGTVIMEPNHPSVYEQLIDHTKALSGRTYKLVSQLLEHSQTQAAR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30185760 30188652 + Bpe025420 Bpe03g01106 101611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01106 437 SMART PINT_4 332 416 IPR000717 -
Bpe03g01106 437 SUPERFAMILY Winged helix DNA-binding domain 332 403 IPR036390 -
Bpe03g01106 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe03g01106 437 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Bpe03g01106 437 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 429 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe03g01106 437 Gene3D - 240 433 - -
Bpe03g01106 437 PIRSF Transl_init_eIF3e 1 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bpe03g01106 437 Pfam PCI domain 285 399 IPR000717 -
Bpe03g01106 437 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 435 - -
Bpe03g01106 437 SMART eIF3_N_2 5 137 IPR019010 -
Bpe03g01106 437 ProSiteProfiles PCI domain profile. 219 403 IPR000717 -
Bpe03g01106 437 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 332 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe13g01044 Bpe-Chr13:16116035 Bpe03g01106 Bpe-Chr3:30185760 3.49E-133 transposed
Bpe03g01106 Bpe-Chr3:30185760 Bpe04g01404 Bpe-Chr4:20714085 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01106 K03250 - rcu:8268657 805.438