Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01118 ATGAACAACTTGACTGTTAATACTGAAGATTCTTTTGTGAATTTGCTTGAACTTGCTGCAAATGATGATCTCGAGGGGTTCAAAAGATTAGTGGAGCTTGATCCTTCTGGTATTGATGAAGTTGGCTTGTGGTATTGCCGTCAGAAAGGCTTGAAGCAAATGGTGAATGGGCATAGAACCCCATTAATGGTTGCGGCTACATATGGTAGCATCGAAGTTATGAAGCTGATTTTGTCATTTTCTGATGCATATATTAACTGTGCGGCTGGATCCGATAAAACCACTGCCCTTCATTGTGCTGCCTCGGGTGGAGCATTTAACGTTGTTAATGCTGTGAAATTGCTTATAGCTGCTGGGGCTGATCCGAACTTGGTTGATGGAAGTGGACATTATCCTGTTGATGTTATTGTTGTTCCTCCAAGGCTTTTGGATGCCAAGTTGATCCTCGAAGAACTTCTGAAGACAAATGGTTATTCTGGTGAAGGCAAGCCAATGGCTTTGACAGGTATATTGAATTCAAATTCTCCTCCTCTTACATCGTCGCCTAAAAAGACGTCTTCTGCTTTAGAGTTGGCCTTTTCGCCTATGAATTCGAAATGGAATGATCTTCACATCTCTTCTTTGTCAGAGAAGAAAGAATACCCTATCGACCCGTCTCTTCCTGACATAAAAAACAGCATATACTCAACTGATGAATTTCGAATGTATTCGTTTAAGGTACGGCCTTGTTCTCGTGCGTATTCACACGACTGGACAGAGTGCCCTTTTGTTCATCCAGGAGAAAATGCTCGAAGAAGGGATCCAAGGAAGTACCATTACAGCTGCGTTCCTTGTCCAGATTTCCGAAAAGGGGCTTGTAGACGTGGAGATTTGTGCGAATACGCACATGGGGTTTTTGAGTGTTGGCTGCACCCAGCTCAGTATAGAACACGGCTTTGCAAGGACGGAACCAGTTGTGCTAGAAGAGTTTGCTTCTTTGCCCACACTGATGAGGAGCTTCGCCCTTTGTATGTATCTACTGGCTCAGCCGTTCCGTCTCCTCGGTCTGGTTCTTCTGGTCCTCCGGTAATGGATTATGCCTCTGCCATGAATATCTTGCCTGGCTCCCCATCTTCAATGTCTGTAATGTCTCCCACACCCTTCACTCCTCCCATGTCTCCTTCAGGTGCCCACTCTTCTTTGGCTTGGCCTCAGCCGAATGTTCCGGCATTGCATCTTCCCGGAAGCAATCTTCAGTCGAGTCGCCTGAGATCATCCGTAAATGCAAGAGACATTTTATTGGAGGATTTTGATTTACTTCCGGAGTTTGATGTTCAGCAACAACAGCATCTGAATGATCTATCGTGTCTCGCCCAACTAAATATGGGTTCTAATTCTTTGAATTGTTCTGGTCGAATGAAAACCCTAACACCTTCGAATCTTGACGATCTGTTTTCTTCTGAGAGTTTATCTCCTAGATACACTGATCAGGCATTGGCAGCGGCTATTTTCTCCCCTACTCACAAGTCAACTGTTCCTGGCCAATTTCAGCATCAACAGAGCATGTTGTCTCCTATCAACACCAATTTCTCCCCTAAAAATGTGGATCACCCTCTTTTACAGGCATCTTTTGGAGTGCCTTCTGGAAGAATGTCTCCAAGAAACGTGGAGCCCATCTCACCAATCAGCTCCCGTTTGTCAATGTTGGCTCAGCGAGAGAAACAGCAACAATTTCGCAGCCTCAGCTCTCGAGAACTTGGTGCAAATTCTTTGAATGTTGGTGGGTCAGCAAGTAATTCTTGGTCAAAATGGGGACCGTCCGATGGAAATTTCACCGATGAATATGGTAAGCTTCGTAGATCTTCTTCATTCGAGTTAGGAAATAACGGGGAAGAGCCCGATTTATCATGGGTTCAATCTCTAGTCAAAGAATCTCCTACTGATGTGAAGGAAAGGCAAGCTATGTCTTTTTCTGGCAATGCAAACTCTGGCAATCCATCGAATGTAAGTACCACGATGGACGCAACCGAGCATGCCGTTTTGGGAGTGTGGATTGAACAAATGCAGCTCGATAATCTTGTAGCTCAGCAAAATTAA 2076 44.65 MNNLTVNTEDSFVNLLELAANDDLEGFKRLVELDPSGIDEVGLWYCRQKGLKQMVNGHRTPLMVAATYGSIEVMKLILSFSDAYINCAAGSDKTTALHCAASGGAFNVVNAVKLLIAAGADPNLVDGSGHYPVDVIVVPPRLLDAKLILEELLKTNGYSGEGKPMALTGILNSNSPPLTSSPKKTSSALELAFSPMNSKWNDLHISSLSEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTDEELRPLYVSTGSAVPSPRSGSSGPPVMDYASAMNILPGSPSSMSVMSPTPFTPPMSPSGAHSSLAWPQPNVPALHLPGSNLQSSRLRSSVNARDILLEDFDLLPEFDVQQQQHLNDLSCLAQLNMGSNSLNCSGRMKTLTPSNLDDLFSSESLSPRYTDQALAAAIFSPTHKSTVPGQFQHQQSMLSPINTNFSPKNVDHPLLQASFGVPSGRMSPRNVEPISPISSRLSMLAQREKQQQFRSLSSRELGANSLNVGGSASNSWSKWGPSDGNFTDEYGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTDVKERQAMSFSGNANSGNPSNVSTTMDATEHAVLGVWIEQMQLDNLVAQQN 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30267889 30269964 - Bpe013017.1 Bpe03g01118 101623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01118 691 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Bpe03g01118 691 Gene3D - 274 335 - -
Bpe03g01118 691 SUPERFAMILY Ankyrin repeat 14 136 IPR036770 -
Bpe03g01118 691 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Bpe03g01118 691 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Bpe03g01118 691 Pfam Ankyrin repeats (3 copies) 24 126 IPR002110 GO:0005515
Bpe03g01118 691 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bpe03g01118 691 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bpe03g01118 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Bpe03g01118 691 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 688 - -
Bpe03g01118 691 Gene3D - 4 150 IPR036770 -
Bpe03g01118 691 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bpe03g01118 691 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bpe03g01118 691 PANTHER UNKEMPT FAMILY MEMBER 1 688 IPR045234 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01118 Bpe-Chr3:30267889 Bpe04g01472 Bpe-Chr4:21301267 0 dispersed
Bpe03g01118 Bpe-Chr3:30267889 Bpe03g00541 Bpe-Chr3:25640373 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21151 PF12796 Ank_2 1.90E-10 CL0465 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01118 - - mnt:21390368 1009.98