Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01125 ATGGAGAATTGCAGGAAATCCCCATTAAAGCCATGGAAGAAAGGTCCATCTAGAGGCAAAGGCGGCCCTCAGAATGCCTCGTGTGAATACCGAGGCGTTCGGCAAAGAACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCTAAGAAGAGAGCTCGATTATGGTTAGGTTCATTTGCTACGGCTGAAGAAGCTGCTATGGCGTACGACGAGGCTGCCCGGAGACTTTACGGTCCGGATGCTTACCTCAATCTTCCACACCTACAACCGAGCTCTATATCTCCGATCAAATCACAAAGATTCAAATGGTTTCCTTCGAAAAATTTTATATCCATGTTTCCATCTTGTGGGTTACTCAATATAAACGCCCAACCTAGTGTTCATGTGATTCATCAGAGGCTTCAAGAGCTAAAACAAAATGGAGTTCTCAAACAAAACCCTTCTAATTCCTCTTCCTGCAATTCAAAATTAGACAGTCAGGTAATCGGCAATAAACCCTTTGCAGAAAATCATGAAGGGAAAGATAAGGTCGGGGATATCTCAACGGAAATGATGATTAGAGTTGAAGAGAAGCCACAGATTGATCTAAATGAGTTTCTTCAACAGCTAGGAATACTGAAAGATAATAATAACAGGTCTGAAGGAGCTGATGAGGCTACAGCAAGTTCAATGGCATCCGAATCTTCATTTAAAGACTACGGATATGAACTCGGCAACTTCACTGACAAGAGCTACAACTGGGATGCTCTGATTGAAATGCATGGCATTGCAGATCAAGCAACTGAAACTGTCAATTTCCAGCTATATGATGTCAATGAAGAACTGAGCTTCCCTTCCTCCATCTGGAACTTT 852 42.84 MENCRKSPLKPWKKGPSRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPSSISPIKSQRFKWFPSKNFISMFPSCGLLNINAQPSVHVIHQRLQELKQNGVLKQNPSNSSSCNSKLDSQVIGNKPFAENHEGKDKVGDISTEMMIRVEEKPQIDLNEFLQQLGILKDNNNRSEGADEATASSMASESSFKDYGYELGNFTDKSYNWDALIEMHGIADQATETVNFQLYDVNEELSFPSSIWNF 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30318381 30319232 + Bpe025421 Bpe03g01125 101630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01125 284 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Bpe03g01125 284 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Bpe03g01125 284 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Bpe03g01125 284 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Bpe03g01125 284 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Bpe03g01125 284 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Bpe03g01125 284 MobiDBLite consensus disorder prediction 1 27 - -
Bpe03g01125 284 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Bpe03g01125 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 281 - -
Bpe03g01125 284 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Bpe03g01125 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00370 Bpe-Chr2:2433806 Bpe03g01125 Bpe-Chr3:30318381 7.40E-35 dispersed
Bpe03g01125 Bpe-Chr3:30318381 Bpe05g00118 Bpe-Chr5:2391279 1.64E-28 dispersed
Bpe15g01168 Bpe-Chr15:20564012 Bpe03g01125 Bpe-Chr3:30318381 4.66E-26 dispersed
Bpe15g01177 Bpe-Chr15:20630603 Bpe03g01125 Bpe-Chr3:30318381 1.10E-31 dispersed
Bpe03g01125 Bpe-Chr3:30318381 Bpe04g00227 Bpe-Chr4:1534337 5.87E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21152 PF00847 AP2 2.50E-14 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01125 - - qsu:112016049 402.134