Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01140 GAGCCAGTACTTGGAATAAATTTTGCGAGAAATGGGATGAATCGCAAAGACTGGATTTCGTTAGTCGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGTTTTCTATCTTGGAACCCTCTCAATTTTAATAATGCTGCCCTTATCACTTGATAGGAAGGACGTTTTAAGCTTGATGAATGATTTACCAACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCTATTGAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATCAAGCACAAAGAGATCAAATGATGGTCAATTGAAAAACAACCCAAAAGCTACAGAAGAAAATTATGAAGACGAAGTAGAACTCAATGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAGTTCTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCACTGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA 525 42.29 EPVLGINFARNGMNRKDWISLVAVHSDSWLLAVVFYLGTLSILIMLPLSLDRKDVLSLMNDLPTVFEVVTERKPIEENPSVDSGSKSRSSTKRSNDGQLKNNPKATEENYEDEVELNETLCGSCGGNYSADEFWIGCDVCERWFHWKCVKITPAKAESIKQYKCPSCSMKKGRQ 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30405445 30408801 + Bpe013037.1 Bpe03g01140 101645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01140 174 Pfam Alfin 1 70 IPR021998 GO:0006355|GO:0042393
Bpe03g01140 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 168 IPR013083 -
Bpe03g01140 174 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 1 174 - -
Bpe03g01140 174 CDD PHD_AL_plant 120 170 IPR044104 -
Bpe03g01140 174 Pfam PHD-finger 121 169 IPR019787 -
Bpe03g01140 174 PANTHER CPG BINDING PROTEIN 1 174 IPR045104 GO:0006355|GO:0042393
Bpe03g01140 174 MobiDBLite consensus disorder prediction 80 104 - -
Bpe03g01140 174 ProSitePatterns Zinc finger PHD-type signature. 121 167 IPR019786 -
Bpe03g01140 174 SMART PHD_3 120 168 IPR001965 -
Bpe03g01140 174 MobiDBLite consensus disorder prediction 76 110 - -
Bpe03g01140 174 SUPERFAMILY FYVE/PHD zinc finger 113 172 IPR011011 -
Bpe03g01140 174 ProSiteProfiles Zinc finger PHD-type profile. 118 170 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01140 - - - zju:107405427 260.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01140 Bpe-Chr3:30405445 Bpe04g00775 Bpe-Chr4:4982058 4.21E-86 dispersed
Bpe03g01140 Bpe-Chr3:30405445 Bpe02g00909 Bpe-Chr2:7559355 2.95E-89 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00728 . 1 258 Alfin-like Transcription Factor Family AT1G14510 80.6 4.1e-112 401.0
Bpe14g00276 CCT,ECH 9 247 Alfin-like Transcription Factor Family AT1G14510 69.7 4.6e-95 344.4
Bpe02g02185 . 1 249 Alfin-like Transcription Factor Family AT1G14510 72.7 4.3e-93 337.8
Bpe13g01240 . 1 257 Alfin-like Transcription Factor Family AT1G14510 67.6 3.4e-90 328.2
Bpe04g01807 . 8 238 Alfin-like Transcription Factor Family AT1G14510 59.6 2.7e-79 292.0
Bpe04g00775 . 7 250 Alfin-like Transcription Factor Family AT1G14510 58.6 2.1e-76 282.3
Bpe02g00502 CCT,ECH 1 253 Alfin-like Transcription Factor Family AT1G14510 51.5 1.5e-69 259.6
Bpe02g00909 . 7 241 Alfin-like Transcription Factor Family AT1G14510 54.3 1.2e-66 250.0
Bpe02g02185 . 1 251 Alfin-like Transcription Factor Family AT5G26210 80.3 2.9e-105 378.3
Bpe14g00276 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 5.5e-104 374.0
Bpe13g01240 . 1 259 Alfin-like Transcription Factor Family AT5G26210 72.6 7.1e-104 373.6
Bpe05g00728 . 9 260 Alfin-like Transcription Factor Family AT5G26210 70.1 2.8e-92 335.1
Bpe04g01807 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.5 1.1e-80 296.6
Bpe04g00775 . 4 252 Alfin-like Transcription Factor Family AT5G26210 57.3 2.5e-80 295.4
Bpe02g00502 CCT,ECH 1 255 Alfin-like Transcription Factor Family AT5G26210 56.9 7.9e-79 290.4
Bpe02g00909 . 4 243 Alfin-like Transcription Factor Family AT5G26210 56.4 2.5e-72 268.9
Bpe13g01240 . 3 259 Alfin-like Transcription Factor Family AT3G42790 72.0 6.8e-99 357.1
Bpe02g02185 . 3 251 Alfin-like Transcription Factor Family AT3G42790 77.9 8.8e-99 356.7
Bpe14g00276 CCT,ECH 3 249 Alfin-like Transcription Factor Family AT3G42790 67.7 1.7e-94 342.4
Bpe05g00728 . 9 260 Alfin-like Transcription Factor Family AT3G42790 67.5 4.4e-90 327.8
Bpe04g01807 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.1 2.0e-79 292.4
Bpe04g00775 . 6 252 Alfin-like Transcription Factor Family AT3G42790 56.2 3.0e-78 288.5
Bpe02g00502 CCT,ECH 1 255 Alfin-like Transcription Factor Family AT3G42790 53.8 7.5e-74 273.9
Bpe02g00909 . 6 243 Alfin-like Transcription Factor Family AT3G42790 52.9 2.1e-68 255.8
Bpe04g01807 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.8 1.4e-112 402.5
Bpe04g00775 . 4 253 Alfin-like Transcription Factor Family AT5G05610 70.9 2.6e-103 371.7
Bpe02g00909 . 4 244 Alfin-like Transcription Factor Family AT5G05610 68.7 3.5e-92 334.7
Bpe14g00276 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 7.2e-90 327.0
Bpe13g01240 . 4 259 Alfin-like Transcription Factor Family AT5G05610 59.1 1.3e-86 316.2
Bpe02g02185 . 4 251 Alfin-like Transcription Factor Family AT5G05610 60.6 5.4e-85 310.8
Bpe05g00728 . 9 260 Alfin-like Transcription Factor Family AT5G05610 63.4 1.3e-83 306.2
Bpe02g00502 CCT,ECH 6 256 Alfin-like Transcription Factor Family AT5G05610 51.2 4.7e-65 244.6
Bpe03g01140 . 1 174 Alfin-like Transcription Factor Family AT5G05610 67.6 1.4e-61 233.0
Bpe04g01807 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.6 6.5e-96 347.1
Bpe04g00775 . 42 253 Alfin-like Transcription Factor Family AT3G11200 72.7 8.0e-86 313.5
Bpe02g00909 . 42 244 Alfin-like Transcription Factor Family AT3G11200 68.3 6.4e-75 277.3
Bpe14g00276 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 1.1e-71 266.5
Bpe05g00728 . 49 260 Alfin-like Transcription Factor Family AT3G11200 63.7 7.3e-71 263.8
Bpe13g01240 . 44 259 Alfin-like Transcription Factor Family AT3G11200 61.1 2.8e-70 261.9
Bpe02g02185 . 44 251 Alfin-like Transcription Factor Family AT3G11200 61.7 1.5e-68 256.1
Bpe03g01140 . 1 174 Alfin-like Transcription Factor Family AT3G11200 64.8 1.9e-58 222.6
Bpe02g00502 CCT,ECH 34 256 Alfin-like Transcription Factor Family AT3G11200 51.3 7.8e-57 217.2
Bpe15g01161 . 85 216 Alfin-like Transcription Factor Family AT3G11200 64.7 8.4e-43 170.6
Bpe05g00728 . 1 169 Alfin-like Transcription Factor Family AT2G02470 81.7 7.0e-75 277.3
Bpe02g02185 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 2.9e-65 245.4
Bpe13g01240 . 1 158 Alfin-like Transcription Factor Family AT2G02470 74.7 3.2e-64 241.9
Bpe14g00276 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 3.0e-62 235.3
Bpe04g01807 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.1 6.8e-54 207.6
Bpe04g00775 . 7 154 Alfin-like Transcription Factor Family AT2G02470 66.2 1.5e-53 206.5
Bpe02g00502 CCT,ECH 1 139 Alfin-like Transcription Factor Family AT2G02470 63.4 1.4e-46 183.3
Bpe02g00909 . 7 154 Alfin-like Transcription Factor Family AT2G02470 58.9 5.4e-43 171.4
Bpe13g01240 . 3 167 Alfin-like Transcription Factor Family AT5G20510 77.6 6.3e-73 270.4
Bpe02g02185 . 3 160 Alfin-like Transcription Factor Family AT5G20510 77.2 1.7e-70 262.3
Bpe14g00276 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 1.2e-66 249.6
Bpe05g00728 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 7.0e-64 240.4
Bpe04g01807 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.7 1.2e-52 203.0
Bpe04g00775 . 6 134 Alfin-like Transcription Factor Family AT5G20510 69.5 1.6e-52 202.6
Bpe02g00502 CCT,ECH 1 166 Alfin-like Transcription Factor Family AT5G20510 56.6 2.7e-47 185.3
Bpe02g00909 . 6 156 Alfin-like Transcription Factor Family AT5G20510 55.4 1.1e-43 173.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21155 PF12165 Alfin 6.00E-22 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g01140 Bpe_Chr03 FPKM 15.466784 16.595144 25.567259 27.047258 34.743923 28.446875 36.108227 25.267075 22.651962 24.070328