Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01140 GAGCCAGTACTTGGAATAAATTTTGCGAGAAATGGGATGAATCGCAAAGACTGGATTTCGTTAGTCGCTGTGCACAGTGATTCATGGTTGCTTGCTGTAGTTTTCTATCTTGGAACCCTCTCAATTTTAATAATGCTGCCCTTATCACTTGATAGGAAGGACGTTTTAAGCTTGATGAATGATTTACCAACTGTCTTTGAAGTTGTGACTGAGAGAAAGCCTATTGAAGAGAACCCCAGTGTGGACAGTGGAAGCAAATCTAGATCAAGCACAAAGAGATCAAATGATGGTCAATTGAAAAACAACCCAAAAGCTACAGAAGAAAATTATGAAGACGAAGTAGAACTCAATGAAACCCTCTGTGGGAGCTGTGGCGGGAATTACAGTGCAGATGAGTTCTGGATTGGCTGCGATGTATGTGAAAGGTGGTTCCACTGGAAGTGCGTCAAGATAACACCTGCTAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAAGAAAGGTAGACAGTGA 525 42.29 EPVLGINFARNGMNRKDWISLVAVHSDSWLLAVVFYLGTLSILIMLPLSLDRKDVLSLMNDLPTVFEVVTERKPIEENPSVDSGSKSRSSTKRSNDGQLKNNPKATEENYEDEVELNETLCGSCGGNYSADEFWIGCDVCERWFHWKCVKITPAKAESIKQYKCPSCSMKKGRQ 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30405445 30408801 + Bpe013037.1 Bpe03g01140 101645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01140 174 Pfam Alfin 1 70 IPR021998 GO:0006355|GO:0042393
Bpe03g01140 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 168 IPR013083 -
Bpe03g01140 174 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 1 174 - -
Bpe03g01140 174 CDD PHD_AL_plant 120 170 IPR044104 -
Bpe03g01140 174 Pfam PHD-finger 121 169 IPR019787 -
Bpe03g01140 174 PANTHER CPG BINDING PROTEIN 1 174 IPR045104 GO:0006355|GO:0042393
Bpe03g01140 174 MobiDBLite consensus disorder prediction 80 104 - -
Bpe03g01140 174 ProSitePatterns Zinc finger PHD-type signature. 121 167 IPR019786 -
Bpe03g01140 174 SMART PHD_3 120 168 IPR001965 -
Bpe03g01140 174 MobiDBLite consensus disorder prediction 76 110 - -
Bpe03g01140 174 SUPERFAMILY FYVE/PHD zinc finger 113 172 IPR011011 -
Bpe03g01140 174 ProSiteProfiles Zinc finger PHD-type profile. 118 170 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01140 Bpe-Chr3:30405445 Bpe04g00775 Bpe-Chr4:4982058 4.21E-86 dispersed
Bpe03g01140 Bpe-Chr3:30405445 Bpe02g00909 Bpe-Chr2:7559355 2.95E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21155 PF12165 Alfin 6.00E-22 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01140 - - zju:107405427 260.381