Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01146 ATGGAAGCGATGCAAATAGATTTGGAGCAAAATCTTCAGCGACTGCAATCTTCGTACAGATCCTTGGACGAGAAATATGATATTCAGAAGGAGGAGTACAGGGGTCAGCAGTACAGTCAGATTTACTTTGCGCGTCTCCAGCTTATGAGAGCGCTCCTTTCTTCCCTTGTTCCTAACTGGAAACCCCATCTGCCTGTCTGCACTGTGCTGGAGTTGGAAGATGGCAAGGAATGCATCATAGTTGGAACCATTTACAAGCACATGAAACTCAAGCCCACAATTCTGCACGAGTATTCAAAAGAGAGATCAGTCACTCCATTGGTTAAGCCACATAACTTTATGCACCCTGATGATCACCTAGTTTTGGAAGATGAAAGTGGAAGAGTGAAGCTTTCTGGAACAATGATTTCACCATCGACGTTTGTAACAGCAGGCATTGTTGTTGCTTTGCATGGAAAGGAAACTTCTGCTGGTGACTTTTTGGTATTAGATGTCTTAGAAGCCGGACTACCATCTCAGAGGGAGATGCCTCATATGTTAAGGGAAGACAAGTATGTTGTCATTCTGTCAGGGCTAAGCATTGGTAGTAGCACTTCTAACCCCTTGCAGTTTCAGCTTCTTGTTGATCATTTAACTGGGCATTTAGGAGATGAGAAGGAACAAGGTATTGCAGCAAAAATAGTTCGGCTTGTTATTGCTGGAAATTCTGTTGAAATATCTCGTGGGCTTCTTAATGGACAGAATTTGGCTAGTAAAGATCAGTCAAGGCTGTCTGAGCCTATCACCGAACTGGATATCTTGTTAACTCAGCTTGTTGCTGGTTTACCTGTGGACATCATGCCTGGTGCAAATGATCCGGCTAACTTTTCTTTACCTCAGCAGCCACTGCATAAATGCCTTTTCCCTGGATCGTCAGCTTATAACACTTTTAGATCCTGTACAAATCCTCATTCCTTCGAGATTGATAATATCAGTTTTCTTGGAACATCAGGTCAAAACATAGACGATCTCGCAAAATACTCAGAGGCAAAGGATAAAGTTGAATTTATGGAGAGGACATTGAATTGGAGGCATCTGGCTCCCACTGCTCCAAATACTCTTGGCTGTTATCCTTTCACGGATAAGGATCCTTTCCTGATTGAGGATTGTCCTCATGTTTATTTCGTAGGCAATCAAGATACCTATGATACTCGCCTAATTGAAGGGCATGAGGGTCAGATGGTCAGACTCATTTGTGTTCCAAAATTCTGCGAAACAGGCGTTGCTGTTATGGTAAACTTACGAAATCTCGAATGCCATACTCTCAGTTTTCGGACCGATTTCAACTAG 1329 42.81 MEAMQIDLEQNLQRLQSSYRSLDEKYDIQKEEYRGQQYSQIYFARLQLMRALLSSLVPNWKPHLPVCTVLELEDGKECIIVGTIYKHMKLKPTILHEYSKERSVTPLVKPHNFMHPDDHLVLEDESGRVKLSGTMISPSTFVTAGIVVALHGKETSAGDFLVLDVLEAGLPSQREMPHMLREDKYVVILSGLSIGSSTSNPLQFQLLVDHLTGHLGDEKEQGIAAKIVRLVIAGNSVEISRGLLNGQNLASKDQSRLSEPITELDILLTQLVAGLPVDIMPGANDPANFSLPQQPLHKCLFPGSSAYNTFRSCTNPHSFEIDNISFLGTSGQNIDDLAKYSEAKDKVEFMERTLNWRHLAPTAPNTLGCYPFTDKDPFLIEDCPHVYFVGNQDTYDTRLIEGHEGQMVRLICVPKFCETGVAVMVNLRNLECHTLSFRTDFN 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30466785 30470861 + Bpe013042.1 Bpe03g01146 101651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01146 442 Pfam DNA polymerase alpha/epsilon subunit B 186 395 IPR007185 GO:0003677|GO:0006260
Bpe03g01146 442 CDD MPP_PolD2_C 185 437 IPR041863 -
Bpe03g01146 442 Coils Coil 5 32 - -
Bpe03g01146 442 Pfam DNA polymerase delta subunit OB-fold domain 37 165 IPR040663 -
Bpe03g01146 442 Gene3D - 44 168 - -
Bpe03g01146 442 Gene3D - 172 441 - -
Bpe03g01146 442 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 9 438 IPR024826 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01146 K02328 POLD2; DNA polymerase delta subunit 2 - vvi:100241865 738.028
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1268 . . . . . Bpe03g01146 . Bma10g00174 . Cmo14g00422 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0534 Cone19ag0482 . . . Cme04g02239 Blo07g01274 . . Bda05g01086 . . . . Sed02g0364 . . . Cma14g00418 . Car14g00385 Cpe03g00370 . Bhi11g02541 Tan08g1499 Cmetu04g0761 . . . . Cla10g01668 Cam10g1715 Cec10g1767 Cco10g1734 Clacu10g1736 Cmu10g2486 Cre10g1868 Lsi03g01734 Csa03g03577 Chy04g01776 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00926 . 145 829 Core DNA Replication Machinery Family AT4G14700 62.7 1.0e-249 859.8
Bpe11g00926 . 146 829 Core DNA Replication Machinery Family AT4G12620 63.5 1.5e-256 882.5
Bpe05g00056 . 7 358 Core DNA Replication Machinery Family AT2G37560 66.2 1.0e-137 486.5
Bpe02g02014 . 1 413 Core DNA Replication Machinery Family AT2G01120 61.4 2.5e-138 488.8
Bpe05g00990 . 4 534 Core DNA Replication Machinery Family AT4G29910 56.5 8.8e-171 597.0
Bpe02g02348 . 1 324 Core DNA Replication Machinery Family AT1G26840 59.6 1.3e-93 339.7
Bpe07g00465 . 1 800 Core DNA Replication Machinery Family AT1G79150 54.6 2.3e-228 788.9
Bpe08g01190 . 1 948 Core DNA Replication Machinery Family AT1G44900 75.4 0.0e+00 1364.4
Bpe01g00814 . 1 550 Core DNA Replication Machinery Family AT5G46280 81.0 1.8e-256 881.7
Bpe15g00852 CCT,ECH 1 826 Core DNA Replication Machinery Family AT2G16440 70.2 0.0e+00 1116.3
Bpe02g02150 . 936 1646 Core DNA Replication Machinery Family AT2G07690 77.2 0.0e+00 1075.8
Bpe08g00796 . 18 846 Core DNA Replication Machinery Family AT5G44635 69.9 0.0e+00 1113.6
Bpe10g00498 . 15 719 Core DNA Replication Machinery Family AT4G02060 84.0 0.0e+00 1189.5
Bpe01g00096 . 40 517 Core DNA Replication Machinery Family AT2G29680 56.7 2.5e-148 522.3
Bpe01g00096 . 1 479 Core DNA Replication Machinery Family AT1G07270 54.8 2.6e-136 482.3
Bpe10g00347 . 1 594 Core DNA Replication Machinery Family AT3G25100 77.6 9.3e-256 879.4
Bpe04g01592 . 28 854 Core DNA Replication Machinery Family AT3G09660 68.0 4.8e-308 1053.5
Bpe15g00015 . 5 626 Core DNA Replication Machinery Family AT2G14050 66.5 4.0e-236 814.3
Bpe05g00287 . 29 421 Core DNA Replication Machinery Family AT2G20980 53.5 1.8e-109 392.9
Bpe09g00382 . 1 142 Core DNA Replication Machinery Family AT1G80190 69.0 6.3e-55 210.7
Bpe05g00429 . 1 143 Core DNA Replication Machinery Family AT3G12530 71.3 7.7e-58 219.9
Bpe08g00963 . 1 145 Core DNA Replication Machinery Family AT3G12530 65.5 6.8e-54 206.8
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT1G19080 65.9 4.6e-68 254.2
Bpe04g01743 . 5 186 Core DNA Replication Machinery Family AT3G55490 65.9 4.6e-68 254.2
Bpe14g01095 . 16 165 Core DNA Replication Machinery Family AT5G49010 66.7 1.3e-52 203.0
Bpe15g00335 . 1 1555 Core DNA Replication Machinery Family AT5G67100 57.9 0.0e+00 1691.0
Bpe10g00777 . 2 617 Core DNA Replication Machinery Family AT1G67630 60.9 3.9e-220 761.1
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe05g00690 . 1 457 Core DNA Replication Machinery Family AT5G41880 63.8 4.2e-176 614.4
Bpe06g00299 . 27 1143 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1749.9
Bpe03g01146 . 4 442 Core DNA Replication Machinery Family AT2G42120 77.2 4.7e-204 707.2
Bpe05g00949 . 1 460 Core DNA Replication Machinery Family AT1G67320 63.8 2.7e-184 641.7
Bpe12g00614 . 6 120 Core DNA Replication Machinery Family AT1G09815 60.2 6.3e-37 150.2
Bpe01g00239 . 4 2121 Core DNA Replication Machinery Family AT1G08260 68.6 0.0e+00 2874.0
Bpe01g00239 . 11 2228 Core DNA Replication Machinery Family AT2G27120 65.7 0.0e+00 2848.5
Bpe07g01082 . 7 460 Core DNA Replication Machinery Family AT5G22110 63.7 2.6e-171 598.6
Bpe08g00232 . 7 905 Core DNA Replication Machinery Family AT5G22010 62.6 3.1e-282 968.0
Bpe05g00631 . 4 334 Core DNA Replication Machinery Family AT1G63160 89.4 1.8e-171 598.6
Bpe02g00056 CCT 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 1.6e-178 622.1
Bpe04g00011 . 4 337 Core DNA Replication Machinery Family AT1G21690 80.6 1.6e-151 532.3
Bpe14g00388 CCT 1 363 Core DNA Replication Machinery Family AT1G77470 78.2 5.0e-159 557.4
Bpe13g01237 . 26 617 Core DNA Replication Machinery Family AT2G06510 68.8 2.3e-249 858.2
Bpe07g00251 . 34 688 Core DNA Replication Machinery Family AT2G06510 53.2 3.6e-202 701.4
Bpe12g00524 CCT 1 626 Core DNA Replication Machinery Family AT5G08020 66.0 2.1e-239 825.1
Bpe07g00755 CCT 1 625 Core DNA Replication Machinery Family AT5G08020 65.7 4.4e-237 817.4
Bpe12g00524 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 65.2 6.6e-236 813.5
Bpe07g00755 CCT 1 620 Core DNA Replication Machinery Family AT5G61000 64.4 8.1e-234 806.6
Bpe07g00251 . 8 809 Core DNA Replication Machinery Family AT4G19130 52.9 1.2e-229 793.1
Bpe02g01809 . 1 396 Core DNA Replication Machinery Family AT5G26680 79.7 5.1e-184 640.6
Bpe04g01926 . 1 299 Core DNA Replication Machinery Family AT2G25100 67.6 9.8e-115 409.8
Bpe08g00178 . 46 802 Core DNA Replication Machinery Family AT1G08130 68.0 1.0e-289 992.6
Bpe08g00178 . 209 802 Core DNA Replication Machinery Family AT1G49250 66.8 7.9e-232 800.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005225 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g01146 Bpe_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0