Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01148 ATGGTTGGTATGGGCCAAAAGGATGCTTATGTTGGTGATGAGGCTCAGTCGAAGAGAGGTATTTTGACATTAAAATACCCAATTGAGCATGGCATTGTTAGCAACTGGGATGACATGGCAAAAATCTGGCACCACACTTTTTATAAAGAGCGTCGTGTGGCTCCGGAAGAGCATCCAGTTCTACTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAGAAGATGGCACAAATTATGTTTGAGACCTTCAATACTCTCGCAATGTATGTTGCCATCCAGGCTGTCCTTTCCCTTTATGCTAGTGGCCGTACGACTGATGGTGTCAGCCATACTTCCCTTCCACATGCCATCCTTCGTTTGGACCTCGCAGGCCGAGATCTCACTGAAGCCCTAATGAAAATCTTGACTGAACGGGGTTACTCTTTCACCAGCACTGCCGAGCGTGAAATTGTTAGAGATGTGAAAGAGAAATTAGCTTACATTGCTCTTGACTACGAACAAGAGCTTGAAACATCGAAAACCAGTTCTTTGGTAGAGATTGGTGCTGAAAGATTCAGATCCCCTGAAGTACTCTTCCAGCCATCAATGATCAGAATGGAAGCTGCTGGCATATACAACACAATCATGAAGTGCGACCATATTAGGAAGGATCTCTATGGCAATATCGTGCTCAGCAATATCGTGCTCAGCGGGGGTTCTACTATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAAATTACAGCATTATCTCCGAGCAGCATGAGGATTAAGGTTTCATTATTGATATGA 795 44.91 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMAKIWHHTFYKERRVAPEEHPVLLTEAPLNPKANREKMAQIMFETFNTLAMYVAIQAVLSLYASGRTTDGVSHTSLPHAILRLDLAGRDLTEALMKILTERGYSFTSTAEREIVRDVKEKLAYIALDYEQELETSKTSSLVEIGAERFRSPEVLFQPSMIRMEAAGIYNTIMKCDHIRKDLYGNIVLSNIVLSGGSTMFPGIADRMSKEITALSPSSMRIKVSLLI 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30472524 30473871 - Bpe013044.1 Bpe03g01148 101653

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01148 264 Gene3D - 95 260 - -
Bpe03g01148 264 Gene3D - 2 94 - -
Bpe03g01148 264 CDD NBD_sugar-kinase_HSP70_actin 31 108 - -
Bpe03g01148 264 SUPERFAMILY Actin-like ATPase domain 1 106 IPR043129 -
Bpe03g01148 264 PRINTS Actin signature 72 85 IPR004000 -
Bpe03g01148 264 PRINTS Actin signature 97 116 IPR004000 -
Bpe03g01148 264 PRINTS Actin signature 6 17 IPR004000 -
Bpe03g01148 264 PRINTS Actin signature 18 40 IPR004000 -
Bpe03g01148 264 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
Bpe03g01148 264 SMART actin_3 1 264 IPR004000 -
Bpe03g01148 264 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Bpe03g01148 264 Gene3D Actin; Chain A, domain 4 123 202 - -
Bpe03g01148 264 PANTHER ACTIN 1 260 IPR004000 -
Bpe03g01148 264 PANTHER ACTIN 3 1 260 - -
Bpe03g01148 264 SUPERFAMILY Actin-like ATPase domain 112 262 IPR043129 -
Bpe03g01148 264 Pfam Actin 7 260 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01148 K10355 ACTF; actin, other eukaryote - gmx:100811630 434.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g01148 Bpe04g01456 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01148 Bpe-Chr3:30472524 Bpe08g00106 Bpe-Chr8:572280 3.74E-164 dispersed
Bpe03g01148 Bpe-Chr3:30472524 Bpe04g01456 Bpe-Chr4:21189952 3.62E-164 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT2G37620 96.6 8.6e-215 742.7
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT2G37620 96.3 4.3e-214 740.3
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.3e-214 739.6
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.1e-213 738.0
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT2G37620 79.0 6.8e-119 424.1
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.2e-213 738.8
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.8e-213 737.6
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.6 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.8e-212 734.9
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.0 1.8e-212 734.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.0e-211 731.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G59370 79.0 2.9e-117 418.7
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.2e-213 738.8
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.6e-213 738.4
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G46520 96.3 3.6e-213 737.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.1e-213 736.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G46520 96.3 8.1e-213 736.1
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 8.9e-212 732.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G46520 79.4 9.8e-118 420.2
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.7e-215 745.0
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.0e-215 744.2
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 5.1e-215 743.4
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.5e-214 741.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.8e-213 737.6
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G12110 79.4 6.8e-119 424.1
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 1.4e-209 725.3
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.4e-209 724.5
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.1e-209 723.0
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.1e-208 721.5
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT3G18780 91.8 4.6e-208 720.3
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 6.0e-208 719.9
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT3G18780 77.0 1.4e-116 416.4
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.1 4.9e-210 726.9
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.4e-209 724.5
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.4e-209 723.4
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.1e-209 723.0
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.0 1.6e-208 721.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 2.1e-208 721.5
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT1G49240 77.0 1.4e-116 416.4
Bpe06g00278 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.4e-217 751.1
Bpe01g00134 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.8 1.5e-214 741.9
Bpe08g00106 CCT 1 377 Cytoskeleton Gene Families AT5G09810 96.3 7.3e-214 739.6
Bpe04g01456 BCT 1 377 Cytoskeleton Gene Families AT5G09810 96.6 7.3e-214 739.6
Bpe15g01288 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.2e-213 738.8
Bpe04g01709 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.6e-213 737.3
Bpe03g01148 BCT 1 260 Cytoskeleton Gene Families AT5G09810 79.4 8.9e-119 423.7
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT2G19760 77.1 4.4e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT2G19760 76.3 5.8e-57 216.9
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT2G19760 75.9 4.1e-55 210.7
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.0e-54 206.8
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29350 77.4 3.7e-56 214.2
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29350 76.3 8.3e-56 213.0
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.4e-55 212.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29350 74.8 9.2e-55 209.5
Bpe02g02225 BCT,CCT 1 87 Cytoskeleton Gene Families AT5G56600 79.3 1.4e-37 152.1
Bpe08g00505 CCT 1 133 Cytoskeleton Gene Families AT4G29340 79.1 2.3e-61 231.5
Bpe01g00568 BCT,CCT 1 133 Cytoskeleton Gene Families AT4G29340 78.4 2.0e-60 228.4
Bpe02g02225 BCT,CCT 1 131 Cytoskeleton Gene Families AT4G29340 74.6 4.5e-57 217.2
Bpe13g01272 . 1 131 Cytoskeleton Gene Families AT4G29340 74.6 7.7e-57 216.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0035092 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g01148 Bpe_Chr03 FPKM 16.937405 18.138863 39.926498 39.868305 126.266548 116.55098 131.301865 21.400915 21.636278 22.254513