Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01154 AAGATCATGGCTCCTGGAGGTGGTGCTTATGAAGAAGTTCTACAATCCCACCCGCCGATTTCTGATTATAACATAACAGCAGCAAAACCAGACATAAGTTCTTCTTTTACAAAACTCTCAGTCGGTAGACGTGAAATATCTTCGACCAGTGGTGTTCACGAGTTGCTCCAGTGTCCTGTCTGTCTAAATTTGATGTACCCTCCAATTCATCAGTGCCCAAATGGCCACACACTCTGTTCCAATTGCAAGATCAAAGTGCATAACTGTTGCCCAACTTGCCGAAACGAACTAGGCGATATTAGGTGCCTGGCTTTGGAAAAGGTGGCTGAATCTTTAGAACTTCAATGCCAATATCAGAGCTTAGGGTGTAGTGATATTTTTCCGTACTACTCGAAGCTTAAACACGAGCAAAGCTGCCGATTCCGGCCCTTCAATTGCCCCTATGCTGGCTCTGAGTGCTCCGTTATGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGATGATCACAAGGTCGACATGCACGATGGTTGTACGTTCAACCATCGATATGTCAAATCAAATCCCGACGAAGTGGAAAACGCCACTTGGATGCTTACAGTGTTCAATTGCTTTGGACGGCAATTCTGCTTACACTTTGAGGCGTTCCTTTTAGGCACATGTCCGGTTTATATGGCGTTTGTACGGTATATGGGAGACGACAACGAAGCAAAGAAATTCAACTACAGCTTAGAAGTAGGTGGCTATGGTAGGAAGCTAATATGGCAGGGAATTCCGAGGAGCATTCGCCAAGATCATATGAAAGTACGCGACAGCCAAGATGGGCTCATTATTCAGAAGAATCTTGCACTCTACTTTTCCGGCAGAGAAAAGAAAGAGCTAAAGTTGCGGGTAACTGGCCGAATTTGGAAAGAAGAATGA 921 45.28 KIMAPGGGAYEEVLQSHPPISDYNITAAKPDISSSFTKLSVGRREISSTSGVHELLQCPVCLNLMYPPIHQCPNGHTLCSNCKIKVHNCCPTCRNELGDIRCLALEKVAESLELQCQYQSLGCSDIFPYYSKLKHEQSCRFRPFNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGTCPVYMAFVRYMGDDNEAKKFNYSLEVGGYGRKLIWQGIPRSIRQDHMKVRDSQDGLIIQKNLALYFSGREKKELKLRVTGRIWKEE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30581124 30582922 + Bpe013052.1 Bpe03g01154 101659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01154 306 CDD RING-HC_SIAHs 56 94 - -
Bpe03g01154 306 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
Bpe03g01154 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 3 305 - -
Bpe03g01154 306 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Bpe03g01154 306 SUPERFAMILY RING/U-box 43 99 - -
Bpe03g01154 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 165 IPR013083 -
Bpe03g01154 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 100 IPR013083 -
Bpe03g01154 306 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bpe03g01154 306 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 3 305 - -
Bpe03g01154 306 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 299 IPR008974 GO:0005515
Bpe03g01154 306 SUPERFAMILY TRAF domain-like 111 303 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01154 Bpe04g01449 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01154 Bpe-Chr3:30581124 Bpe07g01014 Bpe-Chr7:15768477 5.42E-160 dispersed
Bpe03g01154 Bpe-Chr3:30581124 Bpe04g01449 Bpe-Chr4:21132475 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01154 K04506 - rcu:8260973 536.184