Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe03g01154 | AAGATCATGGCTCCTGGAGGTGGTGCTTATGAAGAAGTTCTACAATCCCACCCGCCGATTTCTGATTATAACATAACAGCAGCAAAACCAGACATAAGTTCTTCTTTTACAAAACTCTCAGTCGGTAGACGTGAAATATCTTCGACCAGTGGTGTTCACGAGTTGCTCCAGTGTCCTGTCTGTCTAAATTTGATGTACCCTCCAATTCATCAGTGCCCAAATGGCCACACACTCTGTTCCAATTGCAAGATCAAAGTGCATAACTGTTGCCCAACTTGCCGAAACGAACTAGGCGATATTAGGTGCCTGGCTTTGGAAAAGGTGGCTGAATCTTTAGAACTTCAATGCCAATATCAGAGCTTAGGGTGTAGTGATATTTTTCCGTACTACTCGAAGCTTAAACACGAGCAAAGCTGCCGATTCCGGCCCTTCAATTGCCCCTATGCTGGCTCTGAGTGCTCCGTTATGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGATGATCACAAGGTCGACATGCACGATGGTTGTACGTTCAACCATCGATATGTCAAATCAAATCCCGACGAAGTGGAAAACGCCACTTGGATGCTTACAGTGTTCAATTGCTTTGGACGGCAATTCTGCTTACACTTTGAGGCGTTCCTTTTAGGCACATGTCCGGTTTATATGGCGTTTGTACGGTATATGGGAGACGACAACGAAGCAAAGAAATTCAACTACAGCTTAGAAGTAGGTGGCTATGGTAGGAAGCTAATATGGCAGGGAATTCCGAGGAGCATTCGCCAAGATCATATGAAAGTACGCGACAGCCAAGATGGGCTCATTATTCAGAAGAATCTTGCACTCTACTTTTCCGGCAGAGAAAAGAAAGAGCTAAAGTTGCGGGTAACTGGCCGAATTTGGAAAGAAGAATGA | 921 | 45.28 | KIMAPGGGAYEEVLQSHPPISDYNITAAKPDISSSFTKLSVGRREISSTSGVHELLQCPVCLNLMYPPIHQCPNGHTLCSNCKIKVHNCCPTCRNELGDIRCLALEKVAESLELQCQYQSLGCSDIFPYYSKLKHEQSCRFRPFNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGTCPVYMAFVRYMGDDNEAKKFNYSLEVGGYGRKLIWQGIPRSIRQDHMKVRDSQDGLIIQKNLALYFSGREKKELKLRVTGRIWKEE | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 30581124 | 30582922 | + | Bpe013052.1 | Bpe03g01154 | 101659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe03g01154 | 306 | CDD | RING-HC_SIAHs | 56 | 94 | - | - | |
Bpe03g01154 | 306 | ProSiteProfiles | Zinc finger SIAH-type profile. | 111 | 171 | IPR013010 | GO:0008270 | |
Bpe03g01154 | 306 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 3 | 305 | - | - | |
Bpe03g01154 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 58 | 94 | IPR001841 | - | |
Bpe03g01154 | 306 | SUPERFAMILY | RING/U-box | 43 | 99 | - | - | |
Bpe03g01154 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 165 | IPR013083 | - | |
Bpe03g01154 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 100 | IPR013083 | - | |
Bpe03g01154 | 306 | Pfam | Seven in absentia protein family | 100 | 299 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Bpe03g01154 | 306 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 3 | 305 | - | - | |
Bpe03g01154 | 306 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 299 | IPR008974 | GO:0005515 | |
Bpe03g01154 | 306 | SUPERFAMILY | TRAF domain-like | 111 | 303 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe03g01154 | Bpe04g01449 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g01154 | Bpe-Chr3:30581124 | Bpe07g01014 | Bpe-Chr7:15768477 | 5.42E-160 | dispersed | |
Bpe03g01154 | Bpe-Chr3:30581124 | Bpe04g01449 | Bpe-Chr4:21132475 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe03g01154 | K04506 | - | rcu:8260973 | 536.184 |