Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01190 ATGAACGACTTGTTTTCTTCCCGGTCTTTCTCCCGCGGTCGAACAGGCGTTGAGATGACGAATTCGAATTCACCGACCGCCGTCAATCTCGACAAGTTCTTCGAGGACGCTGAGTCGGTGAAGGACGAGCTGAGGGAGCTCGACGATTTGTATACTCGACTGAAACATTCTCATGAGCAGAGCAAGACTCTCCACAACGCAAAGACCGTGAAGGACCTCCGTTCTCGAATGGACTCGGATGTATCTCTCGCTCTCAAGAAAGCGAAGCTCATTAAGGTTCGGTTGGAAGCCTTAGACAGGGCTAATGCTGCTAATCGGAGCTTACCTGGCTGTGGACCAGGATCTTCGTCGGACCGGACGAGAACGTCGGTGGTCAACGGGCTGAGGAAGAAATTGCAGGACTCTATGGAGAGCTTCAACAATCTGAGGCAGGAGATCTCATCGGAATACAGAGATACCGTACAGCGGAGGTACTACACCGTCACCGGAGAAAATCCTGACGAGAAAACCATTGACCTACTGATCTCTACAGGGGAAAGCGAGACATTCTTGCAGAGAGCGATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATCAATGAAATTCAAGAGAGGCACGATGCAGTAAAAGATATGGAGAAGAACCTCAAGGAACTCCACCAAGTTTTCATGGATATGTCCGTGTTGGTGCAGGCTCAAGGAGAGCAACTCGACGACATTGAGAGCCAAGTGGCAAGAGCTCATTCGTTCGTTAGAGGCGGAACGCAGGAGTTGCACACGGCGAGGGTATATCAGAAAAATACACGGAAATGGGTGATTATTTCTGTTGTTGTTTTGGTGATTATCATCATTGTGATTGTTCTTATAATCGTTAAGCCTGGGAGTAATAGTGGTAATTCATCGTCGCCATAG 915 48.63 MNDLFSSRSFSRGRTGVEMTNSNSPTAVNLDKFFEDAESVKDELRELDDLYTRLKHSHEQSKTLHNAKTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRANAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQEISSEYRDTVQRRYYTVTGENPDEKTIDLLISTGESETFLQRAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMSVLVQAQGEQLDDIESQVARAHSFVRGGTQELHTARVYQKNTRKWVIISVVVLVIIIIVIVLIIVKPGSNSGNSSSP 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30806605 30807990 - Bpe013086.1 Bpe03g01190 101695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01190 304 CDD SynN 30 187 IPR006011 GO:0016020
Bpe03g01190 304 CDD SNARE_syntaxin1-like 199 259 - -
Bpe03g01190 304 PANTHER BNAA05G27280D PROTEIN 8 293 - -
Bpe03g01190 304 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bpe03g01190 304 Gene3D - 28 160 - -
Bpe03g01190 304 SUPERFAMILY t-snare proteins 29 255 IPR010989 GO:0016020|GO:0016192
Bpe03g01190 304 Coils Coil 125 149 - -
Bpe03g01190 304 Gene3D - 196 293 - -
Bpe03g01190 304 Pfam SNARE domain 236 288 IPR000727 -
Bpe03g01190 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Bpe03g01190 304 Coils Coil 200 220 - -
Bpe03g01190 304 SMART tSNARE_6 195 262 IPR000727 -
Bpe03g01190 304 PANTHER SYNTAXIN 8 293 IPR045242 -
Bpe03g01190 304 Coils Coil 30 57 - -
Bpe03g01190 304 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Bpe03g01190 304 SMART SynN_4 25 151 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01190 Bpe-Chr3:30806605 Bpe08g00351 Bpe-Chr8:2103594 7.08E-126 dispersed
Bpe02g00700 Bpe-Chr2:4746882 Bpe03g01190 Bpe-Chr3:30806605 1.19E-142 wgd
Bpe03g01190 Bpe-Chr3:30806605 Bpe04g01486 Bpe-Chr4:21389123 7.31E-177 wgd
Bpe03g01190 Bpe-Chr3:30806605 Bpe04g00619 Bpe-Chr4:3961756 6.41E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01190 K08486 - csv:101208931 463.381