Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01192 ATGAAAGATCCGGTCACTGTTTCGTCGGGCATAACCTACGATCGTCAAAGCATAGAGAAATGGTTGTATTCAAATAGAAAAGATTTTTGTCCTGTTTCGAAACAACTCCTCTCCGGCTCCGATCTCACTCCGAACCATACTCTCCGGCGACTTATTCAAGCGTGGTGCACCGTCAACGCCTCCAACAACGTCGAGAGAATTCCGACGCCGAAACCTCCTGTTAGCAAGACGCAGATCGTCAAAATTCTCAATGATGCGAAATCACCTCTTTCTCAGCTAAAATGTCTGAAAAATCTCCGATCCATTGCCGCTGAGAGCGAGAGTAATAAACGTTGCATCGAATCTGCCGGAGCGGTCGAGTTTTTAGCTTCAATAGTAATTTCCTCCGTTTCCTACGCTCCGGAAGAATATTCCGGCATGGGTTTGGATCGCACGAGAGCGTGTGACGAGGCTTTGAGTACTCTACATAATCTCCAAATCTCCGAAGCCGGGATCAAATCACTCGGCGGAAAAAATGGCGAATTCATCGAAGCCCTAGTCAAAGTAATGCAACGAGGGAGCTACGATTCACGAGCCTATTCAACCATGTTATTGAAATCAATACTCGAACTCACCGATCCGACAAAACTAGGTGATATCAGAGTCGAGTTCTTGGCAGAAATAATTCAAGTTCTGAGCGATCAAATTTCCCACCAATCTTCTATTGCTGCACTGCAAATACTGATAAACCTTCTTCCATGTGGGCGGAATCGACTAAAAGCTGTCCAGGCCGGAGGCGTAACAGTTCTTATCGAGCTTCTTCTCACCTCGCCGGACAGGCGGCCATCCGAGATGATGCTCACTGCCTTGGACTTGCTATGCGGGTGCGCAAACGGTCGGGCCGAGTTGATCAGTCACGGAGCGGGTTTGGCGGTGGTGTCGAAGAAGATTCTTAGGGTTTCTCAGCTGGGAAACGAGAAAGCAGTGAGGATCCTGAACTCAATATCGAAATACTCCGCCACTCCAGCTGTTCTTCACGATATGCTGAGTCTAGGAGTTGTCGCAAAATTGTGTTTGATTCTTCAGGTCGAATGTGGAAGCAAGGCGAAGGATAAAGCAAAACAGATTCTTAAGCTCCATGCTCGATCATGGCGGAATTCGCCATGCATTCCTGCTAATTTGCTTTCTTCTTATCCATCATTTTCTTGA 1188 47.22 MKDPVTVSSGITYDRQSIEKWLYSNRKDFCPVSKQLLSGSDLTPNHTLRRLIQAWCTVNASNNVERIPTPKPPVSKTQIVKILNDAKSPLSQLKCLKNLRSIAAESESNKRCIESAGAVEFLASIVISSVSYAPEEYSGMGLDRTRACDEALSTLHNLQISEAGIKSLGGKNGEFIEALVKVMQRGSYDSRAYSTMLLKSILELTDPTKLGDIRVEFLAEIIQVLSDQISHQSSIAALQILINLLPCGRNRLKAVQAGGVTVLIELLLTSPDRRPSEMMLTALDLLCGCANGRAELISHGAGLAVVSKKILRVSQLGNEKAVRILNSISKYSATPAVLHDMLSLGVVAKLCLILQVECGSKAKDKAKQILKLHARSWRNSPCIPANLLSSYPSFS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30821820 30823007 - Bpe013088.1 Bpe03g01192 101697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01192 395 Gene3D - 77 380 IPR011989 -
Bpe03g01192 395 SUPERFAMILY RING/U-box 1 59 - -
Bpe03g01192 395 SUPERFAMILY ARM repeat 79 358 IPR016024 -
Bpe03g01192 395 ProSiteProfiles U-box domain profile. 1 62 IPR003613 GO:0004842|GO:0016567
Bpe03g01192 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 393 - -
Bpe03g01192 395 SMART Ubox_2 1 55 IPR003613 GO:0004842|GO:0016567
Bpe03g01192 395 PANTHER WDSAM1 PROTEIN 1 393 IPR045185 GO:0061630
Bpe03g01192 395 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Bpe03g01192 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 62 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01192 Bpe-Chr3:30821820 Bpe08g00226 Bpe-Chr8:1261400 1.08E-143 dispersed
Bpe04g00394 Bpe-Chr4:2472305 Bpe03g01192 Bpe-Chr3:30821820 1.40E-06 transposed
Bpe01g00268 Bpe-Chr1:1610696 Bpe03g01192 Bpe-Chr3:30821820 4.14E-142 wgd
Bpe03g01192 Bpe-Chr3:30821820 Bpe04g01488 Bpe-Chr4:21453909 0 wgd
Bpe03g01192 Bpe-Chr3:30821820 Bpe08g00225 Bpe-Chr8:1255473 2.05E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01192 - - mnt:21399943 526.168